Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq71608 760 0.0 seq10961 511 1e-142 seq134406 315 2e-83 seq122253 295 2e-77 seq224456 84.2 5e-14 >seq71608 Length=1524 Score = 760 bits (842), Expect = 0.0 Identities = 424/426 (99%), Gaps = 0/426 (0%) Strand=Plus/Minus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1031 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 972 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 971 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 912 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 852 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 851 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 792 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 732 Query 301 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 731 GGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACG 672 Query 361 GTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 420 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 671 GTGCCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCC 612 Query 421 AACCAC 426 |||||| Sbjct 611 AACCAC 606 >seq10961 Length=594 Score = 511 bits (566), Expect = 1e-142 Identities = 344/383 (90%), Gaps = 1/383 (0%) Strand=Plus/Minus Query 45 CTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGAC 104 ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| Sbjct 594 CTCGGGTGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACCCGAC 535 Query 105 AAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 AAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 475 Query 165 CAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACA 224 |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 474 CAAGAGCTTCGCTTACGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGTGTCACA 415 Query 225 CCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGG 284 |||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 414 CCCTATACGTCCTCTTGCGAGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCCCAGCCA 355 Query 285 CCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCT-TCACCCTCACCGGCGCAC 343 |||||| || || || ||| ||| | |||||||||||| |||| || |||| || Sbjct 354 CCTGGTCACTGCGGCCCTCATTCGCTCAAGGAGCAAGTCCTATCACGAGCAAGGGCGTAC 295 Query 344 CTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGC 403 ||||||||||||||||||| | ||||||| ||||||||| ||||||||||||||||||| Sbjct 294 CTTCTCCCGAAGTTACGGTACAATTTTGCCGAGTTCCTTCACCCGAGTTCTCTCAAGCGC 235 Query 404 CTTGGTATTCTCTACCCAACCAC 426 ||| |||||||||||| ||||| Sbjct 234 CTTAGTATTCTCTACCTGACCAC 212 >seq134406 Length=645 Score = 315 bits (348), Expect = 2e-83 Identities = 238/279 (85%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 149 TTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCA 208 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 1 TTACCGGGGCTTCGATCAAGAGCTTCGCTTACGCTAACCCCATCAATTAACCTTCCGGCA 60 Query 209 CCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAA 268 ||||||||| |||||||| |||||||| |||||| || ||| |||||||||||||||| Sbjct 61 CCGGGCAGGTGTCACACCGTATACGTCATCTTTCGATTTAGCACAGTGCTGTGTTTTTAA 120 Query 269 TAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGTC-CTTC 327 ||||||||| |||| |||||| || || ||| ||| ||| | ||| || || | || Sbjct 121 TAAACAGTCCCAGCCACCTGGTCACTGCGGCCGCCATTCGCTCAGAGAGTAAATCTCATC 180 Query 328 ACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCC 387 || || ||||| ||||||||||||||||||||| | ||||||| ||||||||| ||| Sbjct 181 ACAAACAGCGGCGTACCTTCTCCCGAAGTTACGGTACAATTTTGCCGAGTTCCTTCACCC 240 Query 388 GAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||||||||||||||||| |||||||||||| ||||| Sbjct 241 GAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCAC 279 >seq122253 Length=872 Score = 295 bits (326), Expect = 2e-77 Identities = 324/430 (75%), Gaps = 27/430 (6%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || | |||||||||| | || ||||||||| ||||| | ||||||||| Sbjct 420 CGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCATGTCCTGGAGACAGT 479 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 539 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||||||||||||||||||||||| ||||||| | ||||||| || Sbjct 540 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCTGGGCTTCATTTCAGAGCTT-GC---- 594 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||| || ||||||||| |||||||||||||||||| ||||||||||| ||| Sbjct 595 ----ACCCCTCCACTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTT 650 Query 241 ----TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC 296 || || |||||| |||||||||| ||||||||||| | ||||| | | | Sbjct 651 GAAGCCGACTTAGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGC 710 Query 297 GACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGT 356 || | |||| || | ||| | | || | |||||| |||||| Sbjct 711 CCCCTCAAAATGCTTGCGCA-CAA-----TGA--------GGGCCTCCTTCTTCCGAAGG 756 Query 357 TACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCT 416 ||||| | | |||||| ||||||||| | ||||||||||||||||||||| |||| Sbjct 757 TACGGAGGCAATTTGCCGAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCT 816 Query 417 ACCCAACCAC 426 ||| ||||| Sbjct 817 ACCTGACCAC 826 >seq224456 Length=170 Score = 84.2 bits (92), Expect = 5e-14 Identities = 124/174 (71%), Gaps = 19/174 (11%) Strand=Plus/Minus Query 213 GCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAA 272 |||||||||| |||||||||||| ||| || || |||||| ||||||||||| |||| Sbjct 170 GCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTTCGCAGAGCCCTGTGTTTTTAGTAAA 111 Query 273 CAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGCAAGT--CCTTCACC 330 ||||||| | ||| || | | | || | | || |||| ||||||| Sbjct 110 CAGTCGCCACCCCCTAGTCTGTGCCCCC------ACCGTA------AAGTTGCCTTCACG 63 Query 331 CTCACCGGCGCACCTTCTCCCGAAGTTAC-GGTGCCTTTTTGCCTAGTTCCTTC 383 | || | ||||||||||||||||| || || ||||||| ||||||||| Sbjct 62 GT----GGGCCCCCTTCTCCCGAAGTTACGGGGGCAATTTTGCCGAGTTCCTTC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1256730213248