Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq6532 105 3e-21 seq262164 100 1e-19 seq19459 89.7 2e-16 >seq6532 Length=9725 Score = 105 bits (116), Expect = 3e-21 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| || Sbjct 4066 GGAAAAGAAACTAACGAGGATTCCCTCAGTAGCGGCGAGTGAAGCGGGAAGAGCCCATCG 4007 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGC-GGGACATGTGGCGT 101 | ||||||||| || || |||| | |||| |||||||| Sbjct 4006 CTGAATCCCCGGACC-CGACCGGGCTCGGGGAGTTGTGGCGT 3966 Score = 95.1 bits (104), Expect = 6e-18 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| || Sbjct 4149 GGAAAAGAAACTAACCAGGATTCCCCCAGTAGCGGCGAGTGAAGCGGGAAGAGCCCATCG 4090 Query 61 CCGAA 65 ||||| Sbjct 4089 CCGAA 4085 >seq262164 Length=90925 Score = 100 bits (110), Expect = 1e-19 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| || Sbjct 19629 GGAAAAGAAACTAACCAGGATTCCC-CAGTAGCGGCGAGTGAAGCGGGAAGAGCCCATCG 19571 Query 61 CCGAATCCCCGC 72 ||||||||| || Sbjct 19570 CCGAATCCCAGC 19559 Score = 100 bits (110), Expect = 1e-19 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| || Sbjct 23018 GGAAAAGAAACTAACCAGGATTCCC-CAGTAGCGGCGAGTGAAGCGGGAAGAGCCCATCG 22960 Query 61 CCGAATCCCCGC 72 ||||||||| || Sbjct 22959 CCGAATCCCAGC 22948 >seq19459 Length=205 Score = 89.7 bits (98), Expect = 2e-16 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| || Sbjct 62 GGAAAAGAAACTAACCAGGATTCCCCCAGTAGCGGCGAGTGAAGCGGGAAGAGCCCATCG 3 Query 61 CC 62 || Sbjct 2 CC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229702764960