Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq122253 275 1e-71 seq71608 264 2e-68 seq10961 217 3e-54 seq224456 102 2e-19 seq134406 84.2 5e-14 >seq122253 Length=872 Score = 275 bits (304), Expect = 1e-71 Identities = 287/378 (76%), Gaps = 24/378 (6%) Strand=Plus/Plus Query 2 ACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAA 61 |||| |||||||||| |||| | ||||||| | ||| | | | ||||||||| || Sbjct 427 ACCCCGCATCTTCACGGGGAATTCAATTTCGCTGAGCATGTCCTGGAGACAGTGGGGAAG 486 Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 546 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACA 181 |||||| |||||||||||||||||| |||||| | |||| || |||| || Sbjct 547 CGTTATTGTTACGGCCGCCGTTTACCTGGGCTTCATTTCAGAGC-----TTGC----ACC 597 Query 182 GATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG----CG 237 ||| |||||||||| |||||||||||||||||| ||||||| |||||||| || Sbjct 598 CCTCCACTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCG 657 Query 238 ACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCT-- 295 |||||||||| |||||||||||| |||||||||||| ||| || ||| ||| Sbjct 658 ACTTAGCAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGCCCCCTCA 717 Query 296 ---------GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 || | ||| | |||||| || ||| ||||| | || |||||||||| Sbjct 718 AAATGCTTGCGCACAATGAGGGCCTCCTTCTTCCGAAGGTACGGAGGCAATTTGCCGAGT 777 Query 347 TCCTTAACAATAGTTCTC 364 ||||| | | | ||||| Sbjct 778 TCCTTCAGGACACTTCTC 795 >seq71608 Length=1524 Score = 264 bits (292), Expect = 2e-68 Identities = 290/390 (74%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | |||| ||||||||| |||||| || ||||||| ||| Sbjct 1025 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 966 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 965 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 906 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 ||||||| |||||||||||||||||| ||||||| | | |||||| | ||||| Sbjct 905 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 846 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | |||||||||| ||||||||||||||||| ||||||| || ||| || | Sbjct 845 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 786 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 | ||||| |||||||||| ||||||||||| ||||| | ||| || || | ||| Sbjct 785 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC-GGCAT 727 Query 301 -AG-------------------------ACAGGCACCCCTTCTCCCTAAGTTACGGGGTC 334 || || ||| | ||||||||| ||||||||| | | Sbjct 726 GAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCC 667 Query 335 ATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||| |||||||| || ||||||| Sbjct 666 ATTTTGCCTAGTTCCTTCACCCGAGTTCTC 637 >seq10961 Length=594 Score = 217 bits (240), Expect = 3e-54 Identities = 201/253 (79%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 44 GTTGAGACAG--TGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAG 101 || ||||||| || ||| | ||||| || ||||||| ||||||||||||||||||||| Sbjct 589 GTGGAGACAGCGTGGCCA--TGGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAG 532 Query 102 GAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 |||||||||||||||||||||||||| |||||||||||||||||| ||||||| | | Sbjct 531 GAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAA 472 Query 162 CTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCC 221 |||||| || | ||||| | |||||||||| |||||||||||| |||| || Sbjct 471 GAGCTTCGCTTACGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGTGTCACACCC 412 Query 222 TATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 ||||| || |||||||| || ||||| |||||||||| ||||||||| | ||| Sbjct 411 TATACGTCCTCTTGCGAGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCCCAGCCACCT 352 Query 282 ATTCTCTGCGGCC 294 || |||||||| Sbjct 351 GGTCACTGCGGCC 339 >seq224456 Length=170 Score = 102 bits (112), Expect = 2e-19 Identities = 121/162 (75%), Gaps = 13/162 (8%) Strand=Plus/Minus Query 207 GCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAA 266 ||||||||||| ||||||| ||| |||||| ||| ||||| ||||||||||| ||||| Sbjct 170 GCAGGCGTCAGACCCTATACGTCGCCTTGCGGCTTCGCAGAGCCCTGTGTTTTTAGTAAA 111 Query 267 CAGTCGCTTGGGCCTATTCTCTGCGGCC----------TGTCAT-AGACAGGCACCCCTT 315 ||||||| |||| ||| ||| || || | | | || |||||| Sbjct 110 CAGTCGCCACCCCCTAGTCTGTGCCCCCACCGTAAAGTTGCCTTCACGGTGGGCCCCCTT 51 Query 316 CTCCCTAAGTTACGGGGTC-ATTTTGCCGAGTTCCTT-AACA 355 ||||| ||||||||||| | ||||||||||||||||| |||| Sbjct 50 CTCCCGAAGTTACGGGGGCAATTTTGCCGAGTTCCTTCAACA 9 >seq134406 Length=645 Score = 84.2 bits (92), Expect = 5e-14 Identities = 165/248 (67%), Gaps = 26/248 (10%) Strand=Plus/Plus Query 143 TTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCCTTAACCTTCCAGCA 202 |||| ||||||| | | |||||| || | ||||| | |||||||||| ||| Sbjct 1 TTACCGGGGCTTCGATCAAGAGCTTCGCTTACGCTAACCCCATCAATTAACCTTCCGGCA 60 Query 203 CCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGG 262 ||||||||| |||| | ||||| || |||| ||| |||||| | |||||||||| Sbjct 61 CCGGGCAGGTGTCACACCGTATACGTCATCTTTCGATTTAGCACAGTGCTGTGTTTTTAA 120 Query 263 TAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---------------------TGTCAT- 300 ||||||||| | ||| || |||||||| | |||| Sbjct 121 TAAACAGTCCCAGCCACCTGGTCACTGCGGCCGCCATTCGCTCAGAGAGTAAATCTCATC 180 Query 301 --AGACA--GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | ||| ||| ||||||||| ||||||||| ||||||||||||||||| || Sbjct 181 ACAAACAGCGGCGTACCTTCTCCCGAAGTTACGGTACAATTTTGCCGAGTTCCTTCACCC 240 Query 357 TAGTTCTC 364 ||||||| Sbjct 241 GAGTTCTC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1058970636544