Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq110105 515 1e-143 seq274740 509 5e-142 seq10615 152 2e-34 >seq110105 Length=1201 Score = 515 bits (570), Expect = 1e-143 Identities = 415/499 (83%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 708 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 767 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| | ||||||||||| | Sbjct 768 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTACTCTTGACATCCAGAAAATTTGG 827 Query 121 TAGAGATAGAGGTTTCC---CCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGT 177 |||||| | || |||||||| | | |||||||| ||||||| |||||| Sbjct 828 CAGAGAT----GCCTCAGTGCCTTCGGGA-ATTCTGAGACAGGTGCTGCATGGCTGTCGT 882 Query 178 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGT 237 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 883 CAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGT 942 Query 238 TGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 943 TGCCAGCATTTAGTTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGGG 1002 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 ||||||||||| |||||||| |||||| | | ||||||||||||||||||||||| Sbjct 1003 GACGACGTCAAGTCATCATGGCCCTTACGTGTAGGGCTACACACGTGCTACAATGGTATG 1062 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||| |||| ||||| || | || || ||| | ||| ||||| || ||| |||| Sbjct 1063 TACAGAGGGAAGCGAGACAGTGATGTGGAGCGGACCCCTTAAAGCATATCGTAGTCCGGA 1122 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGC 477 | | |||||||||||||||| ||||| ||||||||||||||||| || ||||||| | Sbjct 1123 TCGGAGTCTGCAACTCGACTCCGTGAAGTCGGAATCGCTAGTAATCGCAGGTCAGCATAC 1182 Query 478 TACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 1183 TGCGGTGAATACGTTCCCG 1201 >seq274740 Length=1326 Score = 509 bits (564), Expect = 5e-142 Identities = 396/466 (85%), Gaps = 8/466 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 865 TACGGCCGCAAGGTTAAAACTCAAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 924 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||||||||||||||||||||||||| |||||||||| ||| | || Sbjct 925 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGCCTTGACATCCAATGAACTTTC 984 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||||||| ||| |||||||| ||| | |||||||| ||||||| ||||||| Sbjct 985 TAGAGATAGATTGGTG---CCTTCGGGA-ACATTGAGACAGGTGCTGCATGGCTGTCGTC 1040 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1041 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGTAACGAGCGCAACCCTTGTCCTTAGTT 1100 Query 239 GCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 ||| || ||| | ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1101 ACCAGCACGTAATGGTGGGCACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGTGG 1160 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||| |||||||| |||||| | |||||||||||||||||||||||| | Sbjct 1161 GGATGACGTCAAGTCATCATGGCCCTTACGGCCTGGGCTACACACGTGCTACAATGGTCG 1220 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| |||| || || ||||||||| ||| ||||||| ||| | || ||| ||| Sbjct 1221 GTACAGAGGGTTGCCAAGCCGCGAGGTGGAGCTAATCCCAGAAAACCGATCGTAGTCCGG 1280 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAAT 462 || | |||||||||||||||| ||||| ||||||||||||||| Sbjct 1281 ATCGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAAT 1326 >seq10615 Length=187 Score = 152 bits (168), Expect = 2e-34 Identities = 148/188 (79%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| ||||||||||||||| | |||||| | |||||||||||||||||||||||| Sbjct 1 GGATGACGTCAAATCATCACGGCCCTTACGTCCTGGGCTACACACGTGCTACAATGGTAG 60 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 |||| || ||||| | || ||| ||| |||| ||||| || |||||||| Sbjct 61 GTACAGAGAGCAGCCACTGCGTGAGCAGGAGCGAATCT-ATAAAACCTATCACAGTTCGG 119 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475 || | ||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| Sbjct 120 ATCGGAGTCTGCAACTCGACTACGTGAAGCTGGAATCGCTAGTAATCGCATATCAGCCAT 179 Query 476 GCTACGGT 483 | | |||| Sbjct 180 GATGCGGT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1499145178240