Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq6532 269 4e-70 seq262164 264 2e-68 seq187789 156 7e-36 seq26994 156 7e-36 seq205202 118 2e-24 seq4270 118 2e-24 seq134663 113 7e-23 seq223164 109 9e-22 seq39898 96.9 6e-18 seq214687 93.3 7e-17 >seq6532 Length=9725 Score = 269 bits (298), Expect = 4e-70 Identities = 219/261 (84%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || |||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 5403 TACCCGCTGATTCCGCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAG 5462 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| |||| || | | |||| | |||| | |||||||||||||| || Sbjct 5463 ACCTGTTATTGC-TCAATCTCGCGT-GGCTATACGCCACTTGTCCCTCTAAGAAGTTGGC 5520 Query 121 CACCAACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || || | | ||| || ||||||||| | | ||||||||||||||||||| Sbjct 5521 GCGCA-CCGCGGCGGGTGGCGCAACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAA 5579 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5580 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCA 5639 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 5640 AGAAAGAGCTCTCAATCTGTC 5660 >seq262164 Length=90925 Score = 264 bits (292), Expect = 2e-68 Identities = 212/250 (85%), Gaps = 7/250 (3%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 6515 TCCG-CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 6573 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | |||| || | | |||| | |||| | |||||||||||||| || || || Sbjct 6574 C-TCAATCTCGCGT-GGCTATACGCCACTTGTCCCTCTAAGAAGTTGGCGCGCA-CCGCG 6630 Query 132 GTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | ||| || ||||||||| | | |||||||||||||||||||||||||||||| Sbjct 6631 GCGGGTGGCGCAACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 6690 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 6691 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTC 6750 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 6751 TCAATCTGTC 6760 >seq187789 Length=173 Score = 156 bits (172), Expect = 7e-36 Identities = 141/174 (81%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83 ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 173 GCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCC 114 Query 84 ATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC--CAGCCA--CCAACCATAGTCGATGG 139 |||| | | |||| |||||||||||||||| ||| | || | | || | Sbjct 113 TTTGGTTAGTCACCAAAAGTCCCTCTAAGAAGCTGCAGAGAATGAAAAAACATTCTCT-C 55 Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 54 AACTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 1 >seq26994 Length=39672 Score = 156 bits (172), Expect = 7e-36 Identities = 203/263 (77%), Gaps = 26/263 (10%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAG--CGCGCGTGCGGCCC-AGAA-CATCTAAGGGC--ATCACAGACCTG 65 |||| |||||||| |||||||||||||| |||| ||||||||||| |||||||||||| Sbjct 8188 TCCGCCAGTGTAGGGCGCGCGTGCGGCCCCAGAAGCATCTAAGGGCGCATCACAGACCTG 8129 Query 66 TTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTC-TAAGAAGCCAGCCACC 124 ||||||| ||| || ||||| | |||| | ||||||| ||||| | || | Sbjct 8128 TTATTGC-TCATC--TCGCGTGGCTT-ACGCCACTTGTCCCTCCTAAGA-GTTGGCGCGC 8074 Query 125 AACCATAGTCGATGGGGC-----TATTTA--GCAGGTTAAG-GTCTCGTTCGTTATCGGA 176 ||| | || ||| || |||||| ||| | || |||||||||||| ||||| Sbjct 8073 GACCGCGG-CGGTGGCGCACAACTATTTACGGCAAGCCCAGAGTCTCGTTCGTTCTCGGA 8015 Query 177 ATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT-AGAAT 235 | ||||||||||||| |||||| | | | ||||||||||||||||||||| ||||| Sbjct 8014 A--AACCAGACAAATCGCTCCACAAGCGAG--ACGGCCATGCACCACCACCCACCAGAAT 7959 Query 236 CAAGAAAGAGCTATCAATCTGTC 258 |||||||||||| |||||||||| Sbjct 7958 CAAGAAAGAGCTCTCAATCTGTC 7936 >seq205202 Length=686 Score = 118 bits (130), Expect = 2e-24 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 563 CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 621 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | | || ||||| | |||| | |||||||||||||| Sbjct 622 ATC-TCGCGTGGCTATACGCCACTTGTCCCTCTAAGAAG 659 >seq4270 Length=118 Score = 118 bits (130), Expect = 2e-24 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 3 CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 61 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 | | || ||||| | |||| | |||||||||||||| Sbjct 62 ATC-TCGCGTGGCTATACGCCACTTGTCCCTCTAAGAAG 99 >seq134663 Length=6670 Score = 113 bits (124), Expect = 7e-23 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 77 CTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 18 Query 202 ACTAAGAACGGCCATGC 218 ||||||||||||||||| Sbjct 17 ACTAAGAACGGCCATGC 1 >seq223164 Length=121 Score = 109 bits (120), Expect = 9e-22 Identities = 63/65 (97%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1 CTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTCTCAAT 60 Query 254 CTGTC 258 ||||| Sbjct 61 CTGTC 65 >seq39898 Length=76 Score = 96.9 bits (106), Expect = 6e-18 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || |||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 68 TACCCGCTGATTCCGCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAG 9 Query 61 ACCTGTTA 68 |||||||| Sbjct 8 ACCTGTTA 1 >seq214687 Length=62253 Score = 93.3 bits (102), Expect = 7e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| | |||| |||| ||||||||||||||||| ||||| ||||||| Sbjct 37325 CTATTTAGCAAGCCCGAGTCTTGTTCTTTATCGGAATTAACCAGGCAAATTGTTCCACCA 37384 Query 202 ACTAAGAACGGCCATGCACCACCA 225 ||||||| |||||||||||||||| Sbjct 37385 ACTAAGAGCGGCCATGCACCACCA 37408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794308353114