Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq262164 300 3e-79 seq8477 159 6e-37 seq278354 102 1e-19 seq118053 86.0 1e-14 seq155424 73.4 7e-11 >seq262164 Length=90925 Score = 300 bits (332), Expect = 3e-79 Identities = 252/297 (85%), Gaps = 9/297 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | ||||||||||||||| |||||||||||| Sbjct 33838 TACTGAGCAGAATTGCCGTAGCGACAACCTTTCATCAGTAGGGTAAA-CTAACCTGTCTC 33896 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||| ||||||||||||||||||||| |||| | ||||||||||||||||||| | Sbjct 33897 ACGACG-TCTAAACCCAGCTCACGTTCC-TATTTGGTGGTGAACAATCCAACGCTTGGTG 33954 Query 120 AAT-TCTGCTTCGGTATGAT-AGGAAGAGCCGACATCGAAG-GATCAAAAAGCAACGTCG 176 ||| |||||||| ||||| ||||||||||||||||| || |||||||||||||||||| Sbjct 33955 AATGTCTGCTTCACAATGATTAGGAAGAGCCGACATCGGAGAGATCAAAAAGCAACGTCG 34014 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT-GGTAACTTTTCTGGCACCTCT 235 ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| || Sbjct 34015 CTATGAACGCTGTGCTGCCACAAGCCAGTTATCCCTGTGGGTAACTTTTCTGACACCCCT 34074 Query 236 AGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA-TGGTTTGTAT 291 || || || | ||| || | |||||||||||||||||| |||||| ||| ||||| Sbjct 34075 TGCGTCGAACTCCGACGGTCAAAAGGATCGATAGGCCACGCTTTCAGCGGTCTGTAT 34131 Score = 284 bits (314), Expect = 2e-74 Identities = 198/221 (90%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC-TGCTTCGG 132 ||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 14983 CCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTGAATTCCTGCTTCAC 15042 Query 133 TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 192 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15043 AATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCT 15102 Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGG 252 ||||||||||| |||| |||||||||||||||||| |||| || || || || | ||| | Sbjct 15103 GCCACAAGCCA-TTAT-CCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTCCGACG 15160 Query 253 GACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 15161 GTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 15201 Score = 208 bits (230), Expect = 1e-51 Identities = 153/175 (87%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 120 AATTCT-GCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 13782 AATTCTTGCTTCACAATGATAG-AAGAGCCGACATCGAAGGATCAAAAAGCAACGCTGCT 13840 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 13841 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCCCT--- 13897 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | || | ||| || | |||||||||||||||||| |||||| ||| ||||||| Sbjct 13898 CGCGAACTCCGACGGTCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 13952 Score = 77.0 bits (84), Expect = 6e-12 Identities = 62/74 (84%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 13696 TACTGAGCAGAATTGCCGTAGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 13755 Query 60 ATGACGGTCTAAAC 73 | |||||||||||| Sbjct 13756 ACGACGGTCTAAAC 13769 >seq8477 Length=42699 Score = 159 bits (176), Expect = 6e-37 Identities = 141/167 (84%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 120 AATTCTGCTTCGGTA-TGA--TAGGA-AGAGCCGACATCGAAGGATCAAAAAGCAACGT- 174 ||||||||||| | ||| ||||| |||||||||||||||||||||||||||||||| Sbjct 24982 AATTCTGCTTCAACAATGAAATAGGAGAGAGCCGACATCGAAGGATCAAAAAGCAACGTT 24923 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG-GCACCT 233 ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 24922 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTAATCCTGTGGTAACTTTTCTGACCACCG 24863 Query 234 C---TAGCCT-CAAATTTCGA--GGGACTAAAGGATCGATAGGCCAC 274 | |||| | | || | ||| || | |||||||||||||||||| Sbjct 24862 CCCTTAGCGTCCGAACTCCGACGGGTCCCAAAGGATCGATAGGCCAC 24816 >seq278354 Length=1106 Score = 102 bits (112), Expect = 1e-19 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 205 TTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATC 264 ||||||||||||||||||||||| |||| || || || || | ||| || | |||||||| Sbjct 641 TTATCCCTGTGGTAACTTTTCTGACACCCCTTGCGTCGAACTCCGACGGTCAAAAGGATC 700 Query 265 GATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| |||||| ||| ||||||| Sbjct 701 GATAGGCCACGCTTTCACGGTCTGTATTC 729 >seq118053 Length=59 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 74 CCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 1 CCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTC 57 >seq155424 Length=146 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 75 TACTGAGCAGAATTGCCGTAGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 134 Query 60 ATGACGGTCTAA 71 | |||||||||| Sbjct 135 ACGACGGTCTAA 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 851642048064