Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq71608 190 4e-46 seq122253 179 7e-43 seq117644 167 5e-39 >seq71608 Length=1524 Score = 190 bits (210), Expect = 4e-46 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||| | ||| |||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1206 GGACAGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAG 1265 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 | ||| | | ||||| || ||||| | || | ||| ||||||||||| | | Sbjct 1266 TACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGC 1325 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| || || ||| |||||| |||||||| || |||| |||||||| ||| Sbjct 1326 TTGACTGCGAGACAGACACGTCGAGCAGGTACGAAAGTAGGTCTTAGTGATCCGGTGGTT 1385 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 1386 CTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1433 >seq122253 Length=872 Score = 179 bits (198), Expect = 7e-43 Identities = 170/216 (79%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| |||||||||||||||||||||||| |||||||||||||||||| ||| | | | Sbjct 231 CGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCAATGGTGGGC 172 Query 185 TCAGCTTGGATGGAAACCATGCGC-ACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 |||| || |||||||| | | | ||||||| |||| ||| | ||||||||| | Sbjct 171 TCAGGACGGTTGGAAACCGTCTGTTAGAGTGCAATGGCATAAGCCCGCCTGACTGCGAGA 112 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | |||||| ||||| |||||||||||| | || |||||||| ||| | ||||| | Sbjct 111 CTGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCTCGTGGAAGG 52 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| ||||||||||| ||| | ||||||| Sbjct 51 GCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 16 >seq117644 Length=450 Score = 167 bits (184), Expect = 5e-39 Identities = 234/315 (74%), Gaps = 14/315 (4%) Strand=Plus/Plus Query 30 ACGCCAGTATTCAAGGAGCCG-CTGTTGGGATACTACCCCTGTTGTATTGGATTTCTAAC 88 |||||||| | |||||| | ||| |||| |||| |||||| ||| |||||| Sbjct 35 ACGCCAGTCCTTGTGGAGCCAACCCTTGAAATAC-ACCCTTGTTGTTCCTGATATCTAAC 93 Query 89 CGGACGAC--GTATAACCGTTGAC-GGGAC-AGTGTCAGTCGGGCAGTTTGACTGGGGCG 144 | ||| | || ||||| ||| ||||| | ||| | |||| |||| ||||||| || Sbjct 94 C--ACGTCCCGTGAAACCGG-GACTGGGACCACTGT--GGCGGGTAGTT-GACTGGG-CG 146 Query 145 GTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCAT 204 ||||||||| || | ||||||||||||| | ||| || ||||| | || |||| | Sbjct 147 GTCGCCTCCAAATG-GTAACGGAGGCGCGCGAAGGTAGGCTCAGATCGGCCAGAAATCGA 205 Query 205 GCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACG 264 || ||||||| |||| ||| || ||||||||| || || ||| ||||| |||| Sbjct 206 TCGTTGAGTGCAATGGCATAAGCCTGCCTGACTGCGAGACTGACAGGTCGAGCAGAGACG 265 Query 265 AAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAA 324 |||||||| | || |||||||| ||| |||| ||||| |||| |||||| |||||||||| Sbjct 266 AAAGTCGGTCATAGTGATCCGGTGGTTCTGAGTGGAAGGGCCATCGCTCAACGGATAAAA 325 Query 325 GCTACCCTGGGGATA 339 | ||| | ||||||| Sbjct 326 GGTACGCCGGGGATA 340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979228871744