Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq274740 641 0.0 seq110105 262 8e-68 seq97994 141 2e-31 >seq274740 Length=1326 Score = 641 bits (710), Expect = 0.0 Identities = 364/367 (99%), Gaps = 2/367 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 407 CTTTACAATCCGAAGACCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGCTTTCGCCC 350 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 290 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 289 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCA 230 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 229 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 170 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 110 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCTTCTCTCTA 50 Query 361 CCGCTCG 367 ||||||| Sbjct 49 CCGCTCG 43 >seq110105 Length=1201 Score = 262 bits (290), Expect = 8e-68 Identities = 176/194 (91%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||| ||||| |||||| || | ||| Sbjct 250 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCAT-GGCTGCATCAGGGTTGCCCCC 193 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 192 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 133 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||| |||||||||| ||| || |||||||||||||||||||| |||||||| Sbjct 132 TGTGGCTGATCTTCCTCTCAGAACAGCTAGAGATCGTCGCCTTGGTGAGCCTTTACCTCA 73 Query 181 CCAACTAGCTAATC 194 |||||||||||||| Sbjct 72 CCAACTAGCTAATC 59 >seq97994 Length=216 Score = 141 bits (156), Expect = 2e-31 Identities = 108/124 (87%), Gaps = 3/124 (2%) Strand=Plus/Plus Query 2 TTTACAATCCG-AAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||||| ||||| || | | |||||| | |||||||| ||||||| |||||| Sbjct 85 TTTACAATCCATAAGACAGTCATCCTT-CACGCGAC-TTGGCTGGTTCAGGCTCTCGCCC 142 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| Sbjct 143 ATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 202 Query 121 TGTG 124 |||| Sbjct 203 TGTG 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068539648320