Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq53099 349 1e-93 seq26321 324 5e-86 seq37825 273 8e-71 seq38156 215 2e-53 seq48931 159 1e-36 >seq53099 Length=925 Score = 349 bits (386), Expect = 1e-93 Identities = 418/557 (75%), Gaps = 18/557 (3%) Strand=Plus/Plus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 87 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 146 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 147 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 204 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 205 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 264 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| ||| |||||||||||||| || |||||| |||||||||||||||| Sbjct 265 TTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATG 324 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | ||||||||| | || ||| | |||||||||| |||||||| Sbjct 325 GATAGATCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCT 383 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| ||||| || || || |||| | | ||| Sbjct 384 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTCGCCACTGAA-AATAAGTCGCTGACCCAT 441 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| ||||| | || |||| || ||||| || | ||||| Sbjct 442 TATACAAAAGGTACGCAGTCAC--AGAAC---AAAG-----TCTGCTCCCACTGCTTGTA 491 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTC 521 ||| | ||||||||| |||||||||||||| | | ||||| |||||| |||||||||| Sbjct 492 CGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTC 551 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCA 581 |||||||| || | |||||||||| || ||||||||| ||| || ||||||| ||| Sbjct 552 ACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCA 611 Query 582 GATTCACACGAAATTTC 598 ||||| || || |||| Sbjct 612 TATTCAGACAAAGTTTC 628 >seq26321 Length=812 Score = 324 bits (358), Expect = 5e-86 Identities = 376/500 (75%), Gaps = 19/500 (4%) Strand=Plus/Minus Query 91 CCCCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACG--CGACGCTGCACCTAAA 148 |||||||| | |||||||||||| || | | || || ||| ||| ||||||| Sbjct 808 CCCCCTAGCCTTAACAGTGCTCTACCCCCA--ATGGAATTCGTCCGAGGCTCTACCTAAA 751 Query 149 TGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAG 208 | |||||||||||||||||||||| | ||||||||||||||||||||| | ||||| Sbjct 750 TAGATTTCGGGGAGAACCAGCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAA 691 Query 209 GTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCT 268 ||||||| || | |||||||| | ||| |||||||||||||| | | |||| | || Sbjct 690 GTCATCCGCTAACTTTTCAACGTTAGTCGGTTCGGTCCTCCAGTTGATGTTACTCAACCT 631 Query 269 TCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCC 328 ||||||||||||||| |||||||| | ||||||||| | | || ||| | |||| | Sbjct 630 TCAACCTGCCCATGGCTAGATCACCGGGTTTCGGGTCTATACCTAGCAACT-AAACGCGC 572 Query 329 TATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAA 388 || ||||||||||||||||||| | | | | | ||||||| || || || | Sbjct 571 AGTTAACACTCGCTTTCGCTACGGCTCCGCTATTC-GCTTAACCTTGCTAC-TAAATATA 514 Query 389 ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGC 448 | |||| | | |||| | ||||||| |||| ||||| | || || || || Sbjct 513 AGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC---------AGAA--CAAGTCTGC 465 Query 449 TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTT 507 ||| || | ||||| | | | |||||||||| |||||||||||||| | ||||||| ||| Sbjct 464 TCCCACTGCTTGTACGTATACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTCTT 405 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 ||| |||||||||||||||||| || | |||||||||| |||||||||||| ||| Sbjct 404 TTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTTAGGAGTATTTAGCCTTGGA 345 Query 568 GGGTGGTCCCGCCAGATTCA 587 || ||||||| ||| ||||| Sbjct 344 GGATGGTCCCCCCATATTCA 325 >seq37825 Length=1228 Score = 273 bits (302), Expect = 8e-71 Identities = 390/542 (72%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTT-GATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCT 111 || ||||||||||||||| || || |||| | | | ||||| |||||||||||| Sbjct 678 GGTATTCGGAGTTTGGTTAGAGTT-GGTAGGTCTCGCGACCCCCGCATCCATCCAGTGCT 620 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | | ||| || |||| ||| ||||| ||||||||||||| Sbjct 619 CTACCCCCTACGGTATTCGCTCGAGGCACTACCTCAATAGTTTTCGCGGAGAACCAGCTA 560 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | | ||||||||||||||||||||| |||| |||||| | | |||||||| | Sbjct 559 TTTCCCGGCTTGATTGGCCTTTCACCCCTAAACACAACTCATCCGGTAACTTTTCAACGT 500 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | | ||||||| |||||| || ||||| ||||| |||| |||| |||||| Sbjct 499 TAATCGGTTCGGACCTCCAGTGCGTGTTACCGCACCTTCATCCTGGTCATGCCTAGATCG 440 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 | | ||||||||| | | |||| |||||||||| |||||||||||||| || Sbjct 439 CCGGGTTTCGGGTCTAATACATCAAACTCTGGCGCCCTATTCAGACTCGCTTTCGCTGCG 380 Query 352 GCTACCCCACACGGGTTAACCTCGC--GACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 |||| || |||| |||| || || || ||| || || ||| | |||| | ||| Sbjct 379 CCTACACCTAACGGCTTAAGCTTGCTTGATACA---TTAAGTCACAGACCCATTATGCAA 323 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 ||| |||| |||| || ||| || | | |||| || | ||||||||| Sbjct 322 GAGGTACGCTGTCA---GG--CCTCAAGGAC------CCTCCAACTGCTTGTAGGCAATC 274 Query 470 GGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 |||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| Sbjct 273 CGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTGCTTTTCACCTTTCCCTCACGGTAC 214 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | || | ||||||||| | | ||||||||||||||| |||||||||| | | |||| Sbjct 213 TAGTTCACTATCGGTCGCATACGAGTATTTAGGCTTAGAGGGTGGTCCCCCTATGTTCAG 154 Query 589 AC 590 || Sbjct 153 AC 152 >seq38156 Length=889 Score = 215 bits (238), Expect = 2e-53 Identities = 273/370 (74%), Gaps = 4/370 (1%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||||| |||| | |||||||||| | || |||| ||| ||| ||||| Sbjct 388 TCGACTACGGACCTTAG-CACCCGCAGTCTGTCTCCCAGGCTCATACTCAACGGTATTCG 330 Query 61 GAGTTTGGTT-GATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTACCTCC 119 |||||||||| || || |||||| | | ||||| ||||||||||||||||| || Sbjct 329 GAGTTTGGTTAGAATT-GGTAAGGCTCGCGCCCCCCGCATCCATCCAGTGCTCTACCCCC 271 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | | || || || || |||||||| ||||| ||||||||||||||| | | Sbjct 270 GTTG-GTAATACCTGAGGCACTACCTAAATAGTTTTCGCGGAGAACCAGCTATCTCCCGG 212 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||| |||||||||||||| |||||||| | |||||| Sbjct 211 CTTGATTGGCCTTTCACCCCTAGTCACAGGTCATCCCCGTCTTTTTCAACAGACGTGGGT 152 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||| | |||| ||||||||||||||| |||||| | | || Sbjct 151 TCGGTCCTCCAGTGCATGTTACTGCACCTTCAACCTGCCCATAACTAGATCGCCGGGTTT 92 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | ||||| |||||||||| ||||||||||||||||| ||| || Sbjct 91 CGGGTCTAATCCACTTAACTCAGTCGCCCTATTCAGACTCGCTTTCGCTACGCTTACACC 32 Query 360 ACACGGGTTA 369 |||| ||| Sbjct 31 TAACGGCTTA 22 >seq48931 Length=594 Score = 159 bits (176), Expect = 1e-36 Identities = 177/232 (76%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | | |||| || ||| |||||| ||| |||| ||| Sbjct 364 GCATTCGGAGTTTGTCAGGAATTGGTAGGCG-GTGAAGCCCCCGCATCCAATCAGTAGCT 422 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| || | || | |||||||||||||||||||||||||||| || ||||| Sbjct 423 CTACCTCTATAAAACTATACACAACGCTGCACCTAAATGCATTTCGGGGAGTACGAGCTA 482 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 | | |||||||||||||||||||||||| ||||||||||||| | |||||||| | Sbjct 483 TTTCCGAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCGAAGACTTTTCAACGT 542 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283 | ||||||| ||||||| || ||||| |||||| ||||||||||| Sbjct 543 CAACCGGTTCGGGCCTCCACTGTGTGTTACCACAGCTTCACCCTGCCCATGG 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1811732896256