Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq53099 654 0.0 seq26321 464 2e-128 seq37825 271 2e-70 seq38156 102 2e-19 >seq53099 Length=925 Score = 654 bits (724), Expect = 0.0 Identities = 403/418 (96%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 239 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGGTAGTCGGTTCGGTCCTCCAGTTA 296 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || ||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 297 GT-GTTACCCAACCTT-CAACCTGCCCAT-GGATAGATCGCCCGGTTT-CGGGTCTATT- 351 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 352 CCCAGCGACTAGACGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 410 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 411 GCTC-GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACA 469 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 AAGTCTGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 529 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 530 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 589 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 647 >seq26321 Length=812 Score = 464 bits (514), Expect = 2e-128 Identities = 358/412 (87%), Gaps = 10/412 (2%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| |||||||||||| ||||| |||||||||||||||||||||| | ||| Sbjct 696 CCACAAGTCAT-CCGCTAACTTTT-CAACGTTAGTCGGTTCGGTCCTCCAGTTGAT-GTT 640 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || ||||||| |||||||||||| || |||||| || ||||| ||||||||| || ||| Sbjct 639 ACTCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCTAGC 584 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| |||| | ||| ||||||||| ||||||| |||| ||||||| |||| ||| | Sbjct 583 AACTAAACGCGCAGTTAACACTCGCTTT-CGCTACGGCTCCGCTATTCGCTTAACCTT-G 526 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | ||| || ||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 525 CTACTAAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACAGAACAA-GTCT 467 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||| Sbjct 466 GCTCCCACTGCTTGTACGTATACGGTTTCAGGTTCTATTTCACTCCCCTCACAGGGGTTC 407 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| Sbjct 406 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTTAGGAGTATTTAGCCTTG 347 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||||||||||||||||||| ||| | | |||| ||| |||||||| Sbjct 346 GAGGATGGTCCCCCCATATTCAGTCAAGATAACACGTGTCCCGACCTACTCG 295 >seq37825 Length=1228 Score = 271 bits (300), Expect = 2e-70 Identities = 317/412 (77%), Gaps = 12/412 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| ||| |||||||| ||||| || ||||||||| |||||||| || |||| Sbjct 527 CACAACTCAT-CCGGTAACTTTT-CAACGTTAATCGGTTCGGACCTCCAGTGCGT-GTTA 471 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCC-CAGC 128 || ||||| || |||| ||| | ||||||||| ||||| |||||||| | | || Sbjct 470 CCGCACCTT-CATCCTGGTCAT-GCCTAGATCGCCGGGTTT-CGGGTCTAATACATCAAA 414 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 || | ||||||| | ||||||||||| |||| ||||| | |||| | |||||||| Sbjct 413 CTCTGG-CGCCCTATTCAGACTCGCTTT-CGCTGCGCCTACACCTAACGGCTTAAGCTT- 357 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTG 247 || | | |||||| | |||||||||| ||| |||||||| |||| | ||| | Sbjct 356 GCTTGATACATTAAGTCACAGACCCATTATGCAAGAGGTACGCTGTCAGGCCTCAAGGAC 297 Query 248 GGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTT 307 |||| |||||||||| ||| | |||||||| || ||||||||||||| |||||| Sbjct 296 C-CTCCAACTGCTTGTAGGCAATCCGTTTCAGGTACTGTTTCACTCCCCTCATCGGGGTG 238 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||| Sbjct 237 CTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCGCATACGAGTATTTAGGCTT 178 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| ||||||||| || |||||||| || | |||| ||| ||||||| Sbjct 177 AGAGGGTGGTCCCCCTATGTTCAGACAGGATTACACGTGTCCCGCCCTACTC 126 >seq38156 Length=889 Score = 102 bits (112), Expect = 2e-19 Identities = 123/157 (78%), Gaps = 9/157 (6%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||||||||| || | |||||||||| | || |||||||||||||||| | |||| Sbjct 187 CACAGGTCATCCCCGT--CTTTTTCAACAGACGTGGGTTCGGTCCTCCAGTGCAT-GTTA 131 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 | ||| ||||||||||||||| ||||||| |||| ||||||||||| ||| Sbjct 130 CTGCACC-TTCAACCTGCCCATA-ACTAGATCG-CCGGGTTTCGGGTCTA-ATCCACTTA 75 Query 130 ACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 ||| || ||||||| | |||||||| ||||||||||| Sbjct 74 ACTCAGTCGCCCTATTCAGACTCGC-TTTCGCTACGC 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237592189696