Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq97516 107 2e-21 seq6532 96.9 4e-18 seq262164 93.3 5e-17 seq310155 82.4 9e-14 >seq97516 Length=324 Score = 107 bits (118), Expect = 2e-21 Identities = 85/100 (85%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG--GG 67 ||||||||||||||| || | ||||||| ||||||||||||||||||||||| || Sbjct 136 AAACCAACAAAATAG--ACCAAGGTCCTATCTTATTATTCCATGCTAATGTATTCAACGG 79 Query 68 CGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 | |||||||||||||||||||||| ||| |||| ||||| Sbjct 78 CCTAAGCCTGCTTTGAACACTCTATTTTGCTCACAGTAAA 39 >seq6532 Length=9725 Score = 96.9 bits (106), Expect = 4e-18 Identities = 139/190 (73%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 6053 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 6111 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || |||| |||| Sbjct 6112 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCCGACAC 6171 Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185 |||| |||| ||||| ||| ||||| ||| | || | |||||| | |||| Sbjct 6172 TCAATCAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTGCACGCCTC 6229 Query 186 GAGGCGGACC 195 |||||||| Sbjct 6230 ACGGCGGACC 6239 >seq262164 Length=90925 Score = 93.3 bits (102), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 7/190 (4%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 7148 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 7206 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || |||| ||| Sbjct 7207 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCTCTCCTGGCAC 7266 Query 129 -CAATGAAGGCATACGGGC--TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCCGT 185 |||| |||| ||||| ||| ||||| ||| | || | |||||| | |||| Sbjct 7267 TCAATCAAGGGCACCGGGCGAAAACCGAGAGGAAGGCCAGG--ACTGCAGTGCACGCCTC 7324 Query 186 GAGGCGGACC 195 |||||||| Sbjct 7325 ACGGCGGACC 7334 >seq310155 Length=126 Score = 82.4 bits (90), Expect = 9e-14 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 2 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTGCTGTTCAGGCG 60 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||||||||||| |||||| |||| ||||| || Sbjct 61 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593338769796