Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq37825 219 1e-54 seq38156 208 2e-51 seq71608 149 1e-33 seq36989 149 1e-33 seq48931 113 1e-22 >seq37825 Length=1228 Score = 219 bits (242), Expect = 1e-54 Identities = 298/411 (73%), Gaps = 21/411 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||| || |||| |||| |||||| ||| ||||||| | || || | | | | Sbjct 1134 CGACTACCCCCTTCGGGCTCGTCTTAGGGGCCGGCTCACCCTGCGCGGATTAGCCTTGCG 1075 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| |||||| | ||| || ||||| | | ||||||||||| || Sbjct 1074 CAGGAACCCTTGGTCTTTCGGCGAAAGGGCATCTCACCCTTTTTATCGCTACTCATGTCT 1015 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACG 178 |||||| |||| | | |||||| || || | ||| | ||||||| || || Sbjct 1014 GCATTCGCACTTCCGATACCTCCACGACCCATT-ACCAGATCGCTTCACAGGCTTACGGA 956 Query 179 ACGCTCCCCTACCCAACCACACAGGTTGC----CAC----AGCTTCGGCGGATAACTTAA 230 ||||||| ||||| | | |||| ||| |||||||| | || |||| | Sbjct 955 ACGCTCCGCTACCG-----CGTGGCTTGCGCCACACCCTAAGCTTCGGTGCATCACTTTA 901 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACTCT 285 |||||| ||||| ||| ||| ||| | ||| |||||||||||| |||||| ||| Sbjct 900 GCCCCGTTACATCTTCGCCGCAGAACCTCTTATTTAGACCAGTGAGCTGTTACGCTTTCT 841 Query 286 TTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC 345 || ||||||||||||||| ||||||||||||||||||| | | | ||||||| ||||| Sbjct 840 TTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGAAGTTCCACATGCTTTC 781 Query 346 CCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||||| ||| | |||| ||| ||||||||| | || ||||||||||||| Sbjct 780 CCACTTAGTGATGACTTGGGGACCTTAGCTGTAGGTCAGGGCTGTTTCCCT 730 >seq38156 Length=889 Score = 208 bits (230), Expect = 2e-51 Identities = 301/413 (73%), Gaps = 15/413 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||||||||||||| ||||||||||| | || || | | | | Sbjct 796 CGACTACGCCTTTCGGCCTCGCCTTAGGAGCCGACTCACCCTGCGCGGATTAGCCTTGCG 737 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCC-GTCACACGCTACTCATGCCT 119 | ||||||||||| |||||| | | || ||| | || ||||||||||| | Sbjct 736 CAGGAACCCTTGGGATTTCGGCGACAGTGTCTCTCACACTGTTTATCGCTACTCATGTCA 677 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACC-ACTGACAC 177 ||||||||||| | || | ||||| || |||| | || |||| | ||| ||| Sbjct 676 GCATTCTCACTTCTGAT-ATCTCCAGCATGGC-TCACGCCACACCTTCGCAGACTTACAG 619 Query 178 GACGCTCCCCTACCCAACCA-CACAGGTTG----CCACAGCTTCGGCGGATAACTTAAGC 232 ||||||| ||||| | || | | | |||||||||||| | ||| ||| Sbjct 618 AACGCTCCGCTACCACTTGATCATAAGATCAAATCCACAGCTTCGGTACTTGTCTTTAGC 559 Query 233 CCCGCTACATTATCGGCGC--GGAATC--ACTT-GACCAGTGAGCTATTACGCACTCTTT 287 |||| ||||| ||| ||| || | | | || |||||||||||| |||||| ||||| Sbjct 558 CCCGGTACATCTTCGCCGCAAGGCAGCTTATTTAGACCAGTGAGCTGTTACGCTTTCTTT 499 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 || |||||||||||| |||||||| |||||||||| || | ||||| ||||||| Sbjct 498 AAATGATGGCTGCTTCTAAGCCAACATCCTGGTTGTTATGGCCGCCTCACATGCTTTCCC 439 Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || || | |||||| ||||||||| || || ||||||||||||||||| Sbjct 438 ACTTAGACAAGATTTAGGGACCTTAGCTGGTGGTCAGGGCTGTTTCCCTCTCG 386 >seq71608 Length=1524 Score = 149 bits (164), Expect = 1e-33 Identities = 254/359 (71%), Gaps = 12/359 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || ||| | | Sbjct 360 CGACTACGCTTTTCAGCCTCGCCTTAGGGACCGACTAACCCTGCGTCGATTAACGTTGCG 301 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATT--CCCACCCGTCACACGCTACTCATGCC 118 | |||| |||||| |||||| | | || | ||||| | | || |||||||| | Sbjct 300 CAGGAAACCTTGGTCTTTCGGCGTGGGTGTTTTTCACACCCATTAT-CGTTACTCATGTC 242 Query 119 TGCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACA 176 |||||| |||| | || | ||||| || | || | || |||||| || ||| Sbjct 241 AGCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCACAGGCTTACA 184 Query 177 CGACGCTCCCCTACCCAACCACAC-AGGTTGCCAC----AGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | || | | | || || |||||||| | || || || Sbjct 183 GAACGCTCCTCTACCGCATCATCCGAAGATGATACCCGTAGCTTCGGTGTATGGTTTGAG 124 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| ||| Sbjct 123 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAG 64 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 | |||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 63 GGTGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACT 5 >seq36989 Length=346 Score = 149 bits (164), Expect = 1e-33 Identities = 234/329 (71%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||| |||| | | || | | || Sbjct 20 CGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTTACCCTGCCCTGATTAGCATGGGA 79 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | |||| |||||| ||||| ||| || ||||| | || |||||||| | Sbjct 80 CAGGAAACCTTGGTCTTCCGGCGTGGGGGTTTTTCACCCCCATTATCGTTACTCATGTCA 139 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCA-CCACTGACACG 178 |||||| |||| | | |||| | | | |||| || ||||| ||||| |||| Sbjct 140 GCATTCGCACTTGTGATATGTCCAGCTCGCC-TCACAGCTCACCTTCAACCACTTACACA 198 Query 179 ACGCTCCCCTACCCAACC---ACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCC 235 ||||||||||||| || | ||| || || ||||||||| || |||| ||||| Sbjct 199 ACGCTCCCCTACCATACGTGTAAACACGTATCCGCAGCTTCGGTATATTGCTTA-GCCCC 257 Query 236 GCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATG 295 | ||||| || |||| | ||| ||| ||||||||||||||| ||||| |||| || Sbjct 258 GTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTG 317 Query 296 GCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||| ||||||||||||| | |||| Sbjct 318 GCTGCTTCTAAGCCAACCTCCTAGCTGTC 346 >seq48931 Length=594 Score = 113 bits (124), Expect = 1e-22 Identities = 124/163 (76%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTG 299 |||||| || ||| | || ||| |||||||| ||||||||||||| || || |||||| Sbjct 153 ATTATCCATGCCGAACCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTG 212 Query 300 CTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTC--CCACTGAGTCAC 357 ||||||||||||| |||| | |||| | ||| || || || ||| | ||| | Sbjct 213 CTTCCAAGCCAACATCCTAGCTGTCAAAGCAGTTCAACCTCGTTTATTCAACTTAACATA 272 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | || ||| |||||||||||| |||||| | ||||||||||| Sbjct 273 TATTTGGGGACCTTAGCTGATGGTCTGGGTTCTTTCCCTCTCG 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173798777856