Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq274740 196 4e-48 seq110105 168 6e-40 seq10615 98.7 8e-19 >seq274740 Length=1326 Score = 196 bits (216), Expect = 4e-48 Identities = 140/161 (87%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | |||||||||||||| ||||||||||||||||| ||||||| Sbjct 1299 TCGAGTTGCAGACTGCGATCCGGACTACGATCGGTTTTCTGGGATTAGCTCCACCTCGCG 1240 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | ||||| ||||||||| ||||||||| ||||||| ||||| || ||||||||| Sbjct 1239 GCTTGGCAACCCTCTGTACCGACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCA 1180 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1179 TGATGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1139 >seq110105 Length=1201 Score = 168 bits (186), Expect = 6e-40 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||||| |||| ||| | ||||| | || | Sbjct 1140 TCGAGTTGCAGACTCCGATCCGGACTACGATATGCTTTAAGGGGTCCGCTCCACATCACT 1081 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||||||| |||||||||| ||||||| |||||||| | ||||||||| Sbjct 1080 GTCTCGCTTCCCTCTGTACATACCATTGTAGCACGTGTGTAGCCCTACACGTAAGGGCCA 1021 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| ||||||||||||||||||||||||| Sbjct 1020 TGATGACTTGACGTCGTCCCCACCTTCCTCCGGTTTGTCAC 980 >seq10615 Length=187 Score = 98.7 bits (108), Expect = 8e-19 Identities = 106/139 (76%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||| ||| |||| ||| | | ||| ||||| ||| || Sbjct 138 TCGAGTTGCAGACTCCGATCCGAACTGTGATAGGTTTTATAG-ATTCGCTCCTGCTCACG 80 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || ||||||| |||||||||| ||||||| ||||| | |||||||| Sbjct 79 CAGTGGCTGCTCTCTGTACCTACCATTGTAGCACGTGTGTAGCCCAGGACGTAAGGGCCG 20 Query 121 TGAGGACTTGACGTCATCC 139 ||| || |||||||||||| Sbjct 19 TGATGATTTGACGTCATCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414699140180