Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq274740 221 2e-55 seq110105 217 2e-54 seq45914 205 2e-50 seq263711 158 2e-36 seq264214 132 8e-29 >seq274740 Length=1326 Score = 221 bits (244), Expect = 2e-55 Identities = 218/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | |||||| |||||||||||||||||| Sbjct 749 CCCACGCTTTCGCACCTCAGTGTCAGTATCAGTCCAGGTGGTCGCCTTCGCCACTGGTGT 690 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | ||||||||||||||||||||||||||| | |||||| ||||| | || Sbjct 689 TCCTTCCTATATCTACGCATTTCACCGCTACACAGGAAATTCCACCACCCTCTACCATAC 630 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||||| ||||||| |||||||||| | ||||||||| ||| Sbjct 629 TCTAGCTCGTCAGTTTTGAATGCAGTTCCCAGGTTGAGCCCGGGGATTTCACATCCAACT 570 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | || ||||| ||| |||||| |||| ||| |||| |||||||||| ||| | Sbjct 569 TAACGAACCACCTACGCGCGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTCTG 510 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||||||||||||||||| ||||||||| |||||||| Sbjct 509 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 468 >seq110105 Length=1201 Score = 217 bits (240), Expect = 2e-54 Identities = 220/286 (77%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||| ||||||| | | ||||||||| || |||| | |||||||||||||| ||| Sbjct 592 CCCACACTTTCGCACATGAGCGTCAGTCTTTGGCCAGGGAGTCGCCTTCGCCACTGATGT 533 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||| |||||||| | |||||||| || Sbjct 532 TCCTCCAGATATCTACGCATTTCACCGCTACACCTGGAATTCCACTCCCCTCTCCAAGAC 473 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTAT----GGGTTGAGCCCATAGTTTTCACATCT 176 || || | |||||| |||| ||||| |||||||||| | |||||||||| Sbjct 472 TCTAGTCATACAGTTCTAAAT----GCTATTCCCAGGTTGAGCCCGGGGCTTTCACATCT 417 Query 177 GACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACC 236 ||| | |||||| | || |||||| |||| ||| |||| ||||||| || || Sbjct 416 AGCTTATATAACCGCCTGCGTGCGCTTTACGCCCAGTAATTCCGATTAACGCTCGCACCC 357 Query 237 TACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 | |||||||||||||||||||||||| ||||||||| |||| ||| Sbjct 356 TCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTC 311 >seq45914 Length=378 Score = 205 bits (226), Expect = 2e-50 Identities = 200/255 (78%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||| | | |||||| | ||||||||||||||||||| Sbjct 125 CCCACGCTTTCGCACCTCAGCGTCAATACCAGTCCAGTGAGCCGCCTTCGCCACTGGTGT 184 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| ||||||||| | ||||||| | | Sbjct 185 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAATTCCACTCACCTCTCCTGGAT 244 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGG-GTTGAGCCCATAGTTTTCACATCTGAC 179 ||||| | |||| | ||| ||| | ||| ||||||| | | |||||| ||| || Sbjct 245 TCAAGCGATGCAGTCTTAAAGGCA-ATTCTGGAGTTGAGCTCCAGGCTTTCACCTCTAAC 303 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||||| || |||||| |||| ||| |||| |||||||| || ||| | Sbjct 304 TTACAAAGCCGCCTACGTGCGCTTTACGCCCAGTAATTCCGAATAACGCTAGCTCCCTCC 363 Query 240 GTATTACCGCGGCTG 254 ||||||||||||||| Sbjct 364 GTATTACCGCGGCTG 378 >seq263711 Length=515 Score = 158 bits (174), Expect = 2e-36 Identities = 209/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| | | |||| || | |||||||||| | ||| | | | |||||||| | || || Sbjct 387 CCCGCACCTTCGAGCTTAAGCGTCAGTTGCGCTCCCGTCAGCTGCCTTCGCAATCGGAGT 328 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || || ||||||| ||||||||||||||||| |||||||| | | | || Sbjct 327 TCTTCGTCATATCTAAGCATTTCACCGCTACACGACGAATTCCGCCAACGTTGTGCGTAC 268 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||| |||| | |||| | | ||||||| || ||||||| | ||| Sbjct 267 TCAAGGAAACCAGTATGCGCTGCAAGTCAGACGTTGAGCGTCTACATTTCACAACACACT 208 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | ||| |||||| | ||||||| |||||||||||||||||||||| | | | || Sbjct 207 TAATCTCCGGCCTACGCTCCCTTTAAACCCAATAAATCCGGATAACGCCCGGACCTTCCG 148 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| | ||||||| ||||||| | |||| Sbjct 147 TATTACCGCGGCTGCTGGCACGGAATTAGCCGGTCCTTATTCGTATGGTA 98 >seq264214 Length=216 Score = 132 bits (146), Expect = 8e-29 Identities = 142/185 (77%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||| | |||||||| | |||||||||||||||||| Sbjct 30 CCCACGCTTTCGCACCTCAGCGTCAATACCTGTCCAGTGAGTCGCCTTCGCCACTGGTGT 89 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| ||||||||| |||||||| |||||| |||||||| | ||||||||| | Sbjct 90 TCTTCCTAATATCTACGAATTTCACCTCTACACTAGGAATTCCACTCACCTCTCCAGGAT 149 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCA-CATCTGAC 179 || || | |||||| | |||| |||||||||| | ||||| | ||| || Sbjct 150 TCTAGCTTAGCAGTTTAGGAGGCAGTTCCGAGGTTGAGCCCCGGGATTTCACCCTCT-AC 208 Query 180 TTGCC 184 ||||| Sbjct 209 TTGCC 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826208286974