Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq71608 140 2e-31 seq117644 132 3e-29 seq122253 123 2e-26 >seq71608 Length=1524 Score = 140 bits (154), Expect = 2e-31 Identities = 116/139 (83%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 1422 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 1363 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || ||| | Sbjct 1362 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCT 1303 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 1302 -ACGACCGATTTCCGACCG 1285 >seq117644 Length=450 Score = 132 bits (146), Expect = 3e-29 Identities = 100/118 (85%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct 329 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACTCAGAACCACCGGATCACTATGACCGA 270 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| ||||||| | ||| ||||||| ||| ||| ||| |||||||||||| Sbjct 269 CTTTCGTCTCTGCTCGACCTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACT 212 >seq122253 Length=872 Score = 123 bits (136), Expect = 2e-26 Identities = 112/140 (80%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 27 TACCTTTTATCCGTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGA 86 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | |||| ||||||| ||| || ||| |||||||||||| | Sbjct 87 CTTTCGTCTCTGCTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCT 146 Query 121 CAC-TACGATTTCCGACCGT 139 || ||| ||||| ||||| Sbjct 147 AACAGACGGTTTCCAACCGT 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350934779800