Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq97516 143 3e-32 seq6532 114 1e-23 seq262164 104 2e-20 seq310155 87.8 2e-15 >seq97516 Length=324 Score = 143 bits (158), Expect = 3e-32 Identities = 143/181 (79%), Gaps = 7/181 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC--TCGAATACATTACCATG 70 |||||| ||| ||| ||||| ||||||||||||| | || | |||||||||| |||| Sbjct 39 TTTACTGTGAGCAAAATAGAGTGTTCAAAGCAGGCTTAGGCCGTTGAATACATTAGCATG 98 Query 71 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGAT 130 |||||||| ||||||| | | |||||||||| ||||| | | |||||||| Sbjct 99 GAATAATAAGATAGGACCTTGG--TCTATTTTGTTGGTTTGC--GTTCCAAGGTAATGAT 154 Query 131 AAATACGGATAGTCGGGGG-TGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 |||| ||||||| ||||| | | |||||||||||||| |||||||||||||||||||| Sbjct 155 TAATAGGGATAGTTGGGGGGTATTCGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 214 Query 190 T 190 | Sbjct 215 T 215 >seq6532 Length=9725 Score = 114 bits (126), Expect = 1e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 6153 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGCAGAGCA 6094 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | ||||| Sbjct 6093 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 6036 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | ||||| ||| | ||||||||||||||||| Sbjct 6035 GATTAAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGGTGAAATTCTTGGAT 5977 >seq262164 Length=90925 Score = 104 bits (114), Expect = 2e-20 Identities = 135/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 7248 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGCAGAGCA 7189 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | ||||| Sbjct 7188 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 7131 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | ||||| || ||||| ||| | |||||||||| |||||| Sbjct 7130 GATTAAGAGGGACTGACGGGGCATTC-GTATTGCGGTGTGAGAGGTGAAATT-TTGGAT 7074 >seq310155 Length=126 Score = 87.8 bits (96), Expect = 2e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 102 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGCAGAGCA 43 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTT 110 ||||||||| ||||||||| | |||||||||| || ||||| Sbjct 42 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510398941760