Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq117644 156 4e-36 seq71608 150 2e-34 seq122253 127 2e-27 >seq117644 Length=450 Score = 156 bits (172), Expect = 4e-36 Identities = 128/156 (82%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| Sbjct 317 GTTGAGCGATGGCCCTTCCACTCAGAACCACCGGATCACTATGACCGACTTTCGTCTCTG 258 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| | |||| ||||||||||| || ||||||||||||||||| | | |||| || Sbjct 257 CTCGACCTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGATCGATTTC 198 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | ||| ||||||| || ||||||||| Sbjct 197 TGGCCGATCTGAGCCTACCTTCGCGCGCCTCCGTTA 162 >seq71608 Length=1524 Score = 150 bits (166), Expect = 2e-34 Identities = 127/156 (81%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 1410 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 1351 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| |||||||||||||| |||| |||| || ||| | |||| || Sbjct 1350 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACCGATTTC 1291 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | ||| |||||||| ||||||||||| Sbjct 1290 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 1255 >seq122253 Length=872 Score = 127 bits (140), Expect = 2e-27 Identities = 123/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 |||||||||||||||||||| | |||||||||||||||||||| |||||| ||| Sbjct 39 GTTGAGCGATGGCCCTTCCACGAGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 98 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT-AACCTCACGATGT 142 ||||| |||| ||||||||||| || ||||||||||||||||| | | ||| | | Sbjct 99 CTCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCTAACAGACGGTTT 158 Query 143 CCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || ||||| | ||| ||| | | || ||||||||| Sbjct 159 CCAACCGTCCTGAGCCCACCATTGCGCGCCTCCGTTA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472119021128