Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq274740 471 1e-130 seq110105 284 3e-74 seq97994 132 1e-28 >seq274740 Length=1326 Score = 471 bits (522), Expect = 1e-130 Identities = 358/415 (86%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||| |||||| ||||||||| |||||||||||||||| ||||||||| |||| Sbjct 410 GTGCTTTACAATCCGAAGACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCC 351 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 291 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||| ||| ||||||||||||||||| || |||||||||||| |||| ||||||||||| Sbjct 290 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCC 231 Query 181 GCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCT 240 ||||||||||||||| | || || ||||| ||||| | |||||||||||||||| || Sbjct 230 ACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCT 171 Query 241 TT-GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 || | | |||| |||||||||||||| |||||||| |||||||||| | | | Sbjct 170 TTCTCCCGTAGGACG-TATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACC 112 Query 300 AGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCT 359 |||||| |||| || ||||||||||||||||||| ||| ||| || |||||||| || Sbjct 111 AGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC-TCA--AGAGAAGCAAGCTTCT 55 Query 360 TCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 --CT-CTACCGCTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 3 >seq110105 Length=1201 Score = 284 bits (314), Expect = 3e-74 Identities = 180/195 (92%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || Sbjct 253 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATGGCTGCATCAGGGTTGCCCC 194 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 193 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 134 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCC 180 ||||||||| || |||||||||| ||||||| ||||||||||| |||| ||| ||||| | Sbjct 133 GTGTGGCTGATCTTCCTCTCAGAACAGCTAGAGATCGTCGCCTTGGTGAGCCTTTACCTC 74 Query 181 GCCAACTAGCTAATC 195 |||||||||||||| Sbjct 73 ACCAACTAGCTAATC 59 >seq97994 Length=216 Score = 132 bits (146), Expect = 1e-28 Identities = 104/123 (85%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 5 TTTACAACCCG-AAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||| || ||| | || || | |||||| | |||||| ||||||| ||||||| Sbjct 85 TTTACAATCCATAAGACAGTCATCCTTCACGCGACTTGGCTGGTTCAGGCTCTCGCCCAT 144 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 145 TGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTG 204 Query 124 TGG 126 ||| Sbjct 205 TGG 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1218454166144