Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq274740 293 7e-77 seq110105 289 8e-76 seq97994 123 7e-26 seq45914 87.8 5e-15 seq263711 86.0 2e-14 seq214059 75.2 3e-11 >seq274740 Length=1326 Score = 293 bits (324), Expect = 7e-77 Identities = 281/362 (78%), Gaps = 26/362 (7%) Strand=Plus/Plus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| ||||||||||||||| ||||| |||| ||||||||||||||| ||| | | ||| Sbjct 212 GTCGGATTAGCTAGTTGGTGGGGTAATGGCTCACCAAGGCGACGATCCGTAACTGGTCTG 271 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| | |||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 272 AGAGGATGATCAGTCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 331 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| |||||||||| |||| | |||||||| | || ||||| Sbjct 332 TGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGTGTGAAGAAGG 391 Query 343 CCTTCGGGTCGTAAAGCTCTGT---CCTCAAGGAAG------------ATA--------- 378 |||||| | ||||||| || | |||||| ||| Sbjct 392 TCTTCGGATTGTAAAGCACTTTAAGTTGGGAGGAAGGGCAGTAAATTAATACTTTGCTGT 451 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||| ||| || |||| |||||||||| |||||||||||||||||||||| Sbjct 452 TTTGACGTTACCGACAGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACA 511 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| | |||||||||||| |||| Sbjct 512 GAGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCGCGTAGGTGGTTCGTTAA 570 Query 498 GT 499 || Sbjct 571 GT 572 >seq110105 Length=1201 Score = 289 bits (320), Expect = 8e-76 Identities = 274/350 (78%), Gaps = 26/350 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 ||||||||||||||| |||||| |||| ||||||||||||||| |||| | ||||||| Sbjct 59 GATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCTCTAGCTGTTCTGAGAG 118 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | |||| |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 119 GAAGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 178 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 ||||||||||||||||| || ||||||||||| | |||||||| | || ||||||||| Sbjct 179 GAATATTGCACAATGGGGGCAACCCTGATGCAGCCATGCCGCGTGTGTGAAGAAGGCCTT 238 Query 347 CGGGTCGTAAAGCTCTGTC---CTCAAGGAA---------GATAATGACGGT-------- 386 ||||| ||||||| || || ||||| | |||| | || Sbjct 239 CGGGTTGTAAAGCACTTTCAGTTGTGAGGAAAGGGTAACGGTTAATACCCGTTATCTGTG 298 Query 387 ACTTGAG-----GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 || | || || ||||| |||||||||| |||||||||||||||||||||||| ||| Sbjct 299 ACGTTAGCAACAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGG 358 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 | || ||||||| |||||||||| |||||||||| | || ||| |||| Sbjct 359 GTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGCGCACGCAGGCGGTT 407 >seq97994 Length=216 Score = 123 bits (136), Expect = 7e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 || |||| ||||| ||| |||||||||||| ||| |||||||||||||||||||||| | Sbjct 216 GGAGATCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGCAGTGAG 157 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||||| ||||||||| | ||||||| |||| | | ||||||| ||||| Sbjct 156 GAATATTGGACAATGGGCGAGAGCCTGAACCAGCCAAGTCGCGTGAAGGATGA 104 >seq45914 Length=378 Score = 87.8 bits (96), Expect = 5e-15 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 422 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGC 481 |||||||||||||||| |||| ||||||||||| |||||||||| |||||||||| | | Sbjct 378 CAGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTACT-GGGCGTAAAGCGCAC 320 Query 482 GTAGGTGGTTTCTTAAGT 499 ||||| || || ||||| Sbjct 319 GTAGGCGGCTTTGTAAGT 302 >seq263711 Length=515 Score = 86.0 bits (94), Expect = 2e-14 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||| | |||||||||||||||||||||||| | || | |||||||||||| || Sbjct 115 CCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTATCCGGATTT 174 Query 463 ACTGGGGCGTAAAGGGTGCGTAGG 486 | | ||| ||||||| ||||||| Sbjct 175 A-TTGGGTTTAAAGGGAGCGTAGG 197 >seq214059 Length=119 Score = 75.2 bits (82), Expect = 3e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTC 365 |||||||||||||| |||||||||||| |||| |||||||||||| || || |||| || Sbjct 118 AAGCCTGATGCAGCGACGCCGCGTGAGGGATGGAGGCCTTCGGGTTGTGAACCTCTTTC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1492765837056