Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq45914 398 2e-108 seq274740 372 7e-101 seq110105 324 3e-86 seq264214 212 2e-52 seq263711 192 1e-46 >seq45914 Length=378 Score = 398 bits (440), Expect = 2e-108 Identities = 315/373 (84%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 37 CAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCG 96 |||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | || Sbjct 378 CAGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTACTGGGCGTAAAGCGCACG 319 Query 97 TAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA 156 |||| || || ||||| ||||||||||| || ||||||| || | | ||| ||| | Sbjct 318 TAGGCGGCTTTGTAAGTTAGAGGTGAAAGCCTGGAGCTCAACTCCAGAATTGCCTTTAAG 259 Query 157 ACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGT 216 |||||| ||| || | |||||| || ||||||||||| ||||||| |||||||| ||| Sbjct 258 ACTGCATCGCTTGAATCCAGGAGAGGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGT 199 Query 217 AGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGG 276 ||||||| ||| ||||||||||||||||||||||| |||||||| | |||| |||||| Sbjct 198 AGATATTCGGAAGAACACCAGTGGCGAAGGCGGCTCACTGGACTGGTATTGACGCTGAGG 139 Query 277 CTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 138 TGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT-CACGCCGTAAACGATG 80 Query 337 AATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGCAGCAAACGCA-ATAAGTATTC 395 | ||||| ||||||||| | | || ||| ||||| |||||| |||||| |||||| || Sbjct 79 ATAACTAGCTGTCGGGGCTC-TTAGAGCTTCGGTGGCGCAGCTAACGCATTTAAGTA-TC 22 Query 396 CACCTGGGGAGTA 408 | ||||||||||| Sbjct 21 CGCCTGGGGAGTA 9 >seq274740 Length=1326 Score = 372 bits (412), Expect = 7e-101 Identities = 321/396 (81%), Gaps = 1/396 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 472 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTAATCG 531 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| | |||||||||||| |||||| || |||||| | || Sbjct 532 GAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCCCCGGG 591 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| || |||||| | |||||||| | || || ||||||| Sbjct 592 CTCAACCTGGGAACTGCATTCAAAACTGACGAGCTAGAGTATGGTAGAGGGTGGTGGAAT 651 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 | | ||||||||||||||||||||||||| | |||||||||||||||||||||| | Sbjct 652 TTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGGCGACCA 711 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 712 CCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 771 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||||||||||||||||| ||||| || ||| | | || || ||| Sbjct 772 TGGTAGTCCACGCCGTAAACGATGTCGACTAGCCGTTGGGATCCTTGAGATCT-TAGTGG 830 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| |||||| ||||| || ||||||||||| Sbjct 831 CGCAGCTAACGCATTAAGTCGACCGCCTGGGGAGTA 866 >seq110105 Length=1201 Score = 324 bits (358), Expect = 3e-86 Identities = 314/403 (78%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| Sbjct 311 GAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTA 370 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 |||||||||||||||||||| | || ||| |||| |||| ||| ||||||| | Sbjct 371 ATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTATATAAGCTAGATGTGAAAGCCC 430 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| || | || ||| ||||| | | ||||||| |||| || |||| Sbjct 431 CGGGCTCAACCTGGGAATAGCATTTAGAACTGTATGACTAGAGTCTTGGAGAGGGGAGTG 490 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 491 GAATTCCAGGTGTAGCGGTGAAATGCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCG 550 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 || |||| | |||||| || | | |||||| ||||| ||| ||||||||||||| Sbjct 551 ACTCCCTGGCCAAAGACTGACGCTCATGTGCGAAAGTGTGGGTAGCGAACAGGATTAGAT 610 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||| ||||||||| || |||||| ||| | | || || | || Sbjct 611 ACCCTGGTAGTCCACACCGTAAACGCTGTCTACTAGCTGTTTGTG----TATTTGATACG 666 Query 369 ---GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || || ||| ||||| |||||| || ||||||||||| Sbjct 667 TGAGTAGCGAAGCTAACGCGCTAAGTAGACCGCCTGGGGAGTA 709 >seq264214 Length=216 Score = 212 bits (234), Expect = 2e-52 Identities = 168/202 (83%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 118 GGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG 177 ||||||| | ||||||||| ||| ||||| | ||||||| |||||| | | || Sbjct 202 GGTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCTAAACTGCTAAGCTAGAATCCTGG 143 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||||||||||||| |||||||| |||||||||||||| ||||||||| Sbjct 142 AGAGGTGAGTGGAATTCCTAGTGTAGAGGTGAAATTCGTAGATATTAGGAAGAACACCAG 83 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 ||||||||||| || |||||| | | |||| |||||| |||||||||||||||| || Sbjct 82 TGGCGAAGGCGACTCACTGGACAGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCGAA 23 Query 298 CAGGATTAGATACCCTGGTAGT 319 |||||||||||||||||||||| Sbjct 22 CAGGATTAGATACCCTGGTAGT 1 >seq263711 Length=515 Score = 192 bits (212), Expect = 1e-46 Identities = 282/396 (71%), Gaps = 15/396 (4%) Strand=Plus/Plus Query 18 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 77 |||||||| | |||||||||||||||||||||||| | || | |||||||||||| || Sbjct 115 CCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCCGGGCGTTATCCGGATTT 174 Query 78 ACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAA 137 | |||| ||||||| ||||||| | |||||| | |||||| | |||||| Sbjct 175 ATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGTGTGTTGTGAAATGTAGACGCTCAA 234 Query 138 CCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT--GCAGGAGG--GGCAAGTGGAATT 193 | | | ||| | |||| || |||| ||| | | ||| |||||| Sbjct 235 CGTCTGACTTGCAGCGCATACTGGTTTCCTTGAGTACGCACAACGTTGGC----GGAATT 290 Query 194 CCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTG 253 | | ||||||||||||||||| ||||||| | || |||| || | |||||||| ||| Sbjct 291 CGTCGTGTAGCGGTGAAATGCTTAGATATGACGAAGAACTCCGATTGCGAAGGCAGCTGA 350 Query 254 CTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCT 313 | ||| | ||||||| || | ||||||| | | ||| | | |||||||||||||||||| Sbjct 351 CGGGAGCGCAACTGACGCTTAAGCTCGAAGGTGCGGGTATCGAACAGGATTAGATACCCT 410 Query 314 GGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCT-CCGGTGC 372 |||||||| | | |||||||||| || | | ||| || || || | | | | Sbjct 411 GGTAGTCCGCACAGTAAACGATGGATGCCCGCTGTTGG------TACCTGGTATCAGCGG 464 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || ||| |||| || |||||||||||||| Sbjct 465 CTAAGCGAAAGCATTAAGCATCCCACCTGGGGAGTA 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199316142592