Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq6532 269 5e-70 seq262164 178 2e-42 seq205202 168 1e-39 seq187789 111 3e-22 seq4270 111 3e-22 seq26994 107 4e-21 seq39898 91.5 3e-16 seq92620 77.0 6e-12 >seq6532 Length=9725 Score = 269 bits (298), Expect = 5e-70 Identities = 222/265 (84%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||| |||||||||||||| | ||| | |||| | | || ||||| |||||||||| Sbjct 5521 CGCCAACTTCTTAGAGGGACAAGTGGCGTATAGCC-ACGCGAGATTGAG-CAATAACAGG 5464 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||| |||||||||||||||||||||| | || || || || Sbjct 5463 TCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGGCGGAATCAGCGGGT 5404 Query 185 TCATCACC-TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 || | || ||||||||||||||||||||||| | || ||| |||| ||||||||| Sbjct 5403 ACACCGCCCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAG 5344 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||||| | ||| |||||||||| || |||||||||| ||||||||| ||| Sbjct 5343 GGAATTGCAATTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGC 5284 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||||||||| Sbjct 5283 GTTGATTACGTCCCTGCCCTTTGTA 5259 >seq262164 Length=90925 Score = 178 bits (196), Expect = 2e-42 Identities = 171/210 (81%), Gaps = 7/210 (3%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||| |||||||||||||| | ||| | |||| | | || ||||| |||||||||| Sbjct 6621 CGCCAACTTCTTAGAGGGACAAGTGGCGTATAGCC-ACGCGAGATTGAG-CAATAACAGG 6564 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||| |||||||||||||||||||||| | || | ||| || Sbjct 6563 TCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTG-CGGAATC-ACGGGT 6506 Query 185 TCATC-ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 || | ||||||||||||||||||||||||| | || ||| |||| ||||||||| Sbjct 6505 ACACCGCCCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAG 6446 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGA 273 | |||||||||||| | ||| |||||||| Sbjct 6445 GGAATTGCAATTATTTC-CTTGAACGAGGA 6417 >seq205202 Length=686 Score = 168 bits (186), Expect = 1e-39 Identities = 120/138 (87%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||||||||||||||||||||| | || ||| |||| ||||||||| | |||| Sbjct 307 CCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAGGGAATTG 248 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | ||| |||||||||| || |||||||||| ||||||||| |||||||||| Sbjct 247 CAATTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATT 188 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 187 ACGTCCCTGCCCTTTGTA 170 Score = 116 bits (128), Expect = 7e-24 Identities = 106/131 (81%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 148 GGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC-TTGGCCGGAAGGTC 206 |||||||||||||||||||||| | || || || || || | || |||||||||||||| Sbjct 509 GGGCCGCACGCGCGCTACACTGGCGGAATCAGCGGGTACACCGCCCTTGGCCGGAAGGTC 450 Query 207 TGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCA 266 ||||||||| | || ||| |||| ||||||||| | |||||||||||| | ||| | Sbjct 449 TGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAGGGAATTGCAATTATTTCCCTTGA 390 Query 267 ACGAGG-AATG 276 |||||| |||| Sbjct 389 ACGAGGTAATG 379 Score = 111 bits (122), Expect = 3e-22 Identities = 90/105 (86%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||| |||||||||||||| | ||| | |||| | | || ||||| |||||||||| Sbjct 665 CGCCAACTTCTTAGAGGGACAAGTGGCGTATAGCC-ACGCGAGATTGAG-CAATAACAGG 608 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 607 TCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTG 563 >seq187789 Length=173 Score = 111 bits (122), Expect = 3e-22 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||| | || | | || | ||||||| | ||||||||||||||||| Sbjct 81 GCTTCTTAGAGGGACTTTTGGTGACTAACCAAAGGAAGTTGGGGGCAATAACAGGTCTGT 140 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||||||||| ||||||||||||||||| Sbjct 141 GATGCCCTTAGATGTCCTGGGCCGCACGCGCGC 173 >seq4270 Length=118 Score = 111 bits (122), Expect = 3e-22 Identities = 90/105 (86%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 66 CGCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGG 124 |||| |||||||||||||| | ||| | |||| | | || ||||| |||||||||| Sbjct 105 CGCCAACTTCTTAGAGGGACAAGTGGCGTATAGCC-ACGCGAGATTGAG-CAATAACAGG 48 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 47 TCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTG 3 >seq26994 Length=39672 Score = 107 bits (118), Expect = 4e-21 Identities = 166/217 (76%), Gaps = 20/217 (9%) Strand=Plus/Plus Query 74 TCTTAG-AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||| |||||| | ||| ||||| | | || | ||| |||||||||||||||||| Sbjct 8084 TCTTAGGAGGGACAAGTGGCGTAAGCC-ACGCGAGAT-GAG-CAATAACAGGTCTGTGAT 8140 Query 133 --GCCCTTAGATG-TTCT-GGGCCGCACGCGCG--CTACACTGACAGAGCCA--ACGAGT 184 ||||||||||| |||| |||||||||||||| |||||||| | || || | || Sbjct 8141 GCGCCCTTAGATGCTTCTGGGGCCGCACGCGCGCCCTACACTGGCGGAATCATTCGGCGT 8200 Query 185 TCATC-ACCTTG-GCCGGA--AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA 240 || | ||||| |||||| ||||||||||||| | | |||||| |||| |||||| Sbjct 8201 ACACCGCCCTTGCGCCGGAGTTGGTCTGGGTAATC-CGCTGAACTCT-CCGTGATGGGGA 8258 Query 241 -TAGAGCATTGCAATTATTGCTCTTCAACGAG-GAAT 275 || | |||||||||||| | ||| |||||| |||| Sbjct 8259 TTATGGAATTGCAATTATTTCCCTTGAACGAGCGAAT 8295 >seq39898 Length=76 Score = 91.5 bits (100), Expect = 3e-16 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 118 TAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCC 177 ||||||||||||||||||||||||||||| |||||||||||||||||||||| | || | Sbjct 1 TAACAGGTCTGTGATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGGCGGAATC 60 Query 178 AACGAGTTCA 187 | || || || Sbjct 61 AGCGGGTACA 70 >seq92620 Length=28825 Score = 77.0 bits (84), Expect = 6e-12 Identities = 48/52 (92%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||| || |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 18699 AATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCCCTGCCCTT 18648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944142495232