Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq48931 360 6e-97 seq38156 315 2e-83 seq37825 306 1e-80 seq53099 304 4e-80 seq26321 235 2e-59 seq26967 104 8e-20 seq71608 89.7 2e-15 seq36989 82.4 3e-13 >seq48931 Length=594 Score = 360 bits (398), Expect = 6e-97 Identities = 389/508 (77%), Gaps = 7/508 (1%) Strand=Plus/Minus Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 |||||| |||| ||||| || |||||||| | |||||| ||||||| | | |||||| Sbjct 594 CCATGGGCAGGGTGAAGCTGTGGTAACACACAGTGGAGGCCCGAACCGGTTGACGTTGAA 535 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 || | |||||| ||||||||||||||||||||| || |||||| |||||||||| || Sbjct 534 AAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGT 475 Query 177 TCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCAT-CGGGGGTAGAGC-ACTG 234 ||| |||||| |||||||| || | |||| | | |||||||| |||| Sbjct 474 ACTCCCCGAAATGCATTTAGGTGCAGCGTTGTGTATAGTTTTATAGAGGTAGAGCTACTG 415 Query 235 TTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT 294 | ||| | |||| | | | | |||||| | | |||||||||||||| || | Sbjct 414 AT-TGGATGCGGGGGCTTCACCGCCTACCAATTCCTGACAAACTCCGAATGC-TATAAAA 357 Query 295 TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGG 354 | | | | ||||||||||||||||||||||||| || |||||||| ||||| || | Sbjct 356 TGATGCACAGCAGTGAGGGCATGGGTGCTAAGGTCCATGTCCGAGAGGGAAAGAACCCAG 297 Query 355 ACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAG 414 || ||||||||||| ||| |||| | |||||| || ||||| || | |||| | Sbjct 296 ACCATCAGCTAAGGTCCCCAAATATATGTTAAGTTGAATAAACGAGGTTGAACTGCTTTG 237 Query 415 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 236 ACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTA 177 Query 475 GTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 |||||| || ||| ||||||||||||||| || || | |||||||||| ||| | Sbjct 176 GTCGAGCGGTTCGGCATGGATAATAATCGGGCATAAACAT-ACTACCGAAGCTATGGACT 118 Query 535 --CATTTATATGATCGGTAGGGGAGCAT 560 |||||||| | ||||||||||||| Sbjct 117 TATATTTATATAAGTGGTAGGGGAGCAT 90 >seq38156 Length=889 Score = 315 bits (348), Expect = 2e-83 Identities = 363/481 (75%), Gaps = 12/481 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||||| ||| || ||||||||||||| | |||||| | Sbjct 51 CGAGTCTGAATAGGGCGACTGAGTTAAGTGGATTAGACCCGAAACCCGGCGATCTAGTTA 110 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||| |||| ||||||||| |||||| || ||||||| |||||||||| |||||||||| Sbjct 111 TGGGCAGGTTGAAGGTGCAGTAACATGCACTGGAGGACCGAACCCACGTCTGTTGAAAAA 170 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 |||||||| ||||| |||||||||||||| || ||| | ||| |||||||||||| Sbjct 171 GACGGGGATGACCTGTGACTAGGGGTGAAAGGCCAATCAAGCCGGGAGATAGCTGGTTCT 230 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 | ||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||| Sbjct 231 CCGCGAAAACTATTTAGGTAGTGCCTCAGGTATTACCAACGGGGGTAGAGCACTG-GATG 289 Query 240 GCT-AGGGGGTCATTGCGA--CTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 | | ||||| | |||| |||||||| | |||||||||||| | | ||| | Sbjct 290 GATGCGGGGGGC---GCGAGCCTTACCAATTCTAACCAAACTCCGAATACCGTTGAGTAT 346 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | | ||||| || |||||||||||||||| ||||||| || | || ||| Sbjct 347 GAGCCTGGGAGACAGACTGCGGGTGCTAAGGTCCGTAGTCGAGAGGGAAACAGCCCTGAC 406 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | ||||||||| ||| |||| |||||| | || | || | || | || Sbjct 407 CACCAGCTAAGGTCCCTAAATCTTGTCTAAGTGGGA--AAGCATGTGAGGCGGCCATAAC 464 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | ||||||||||||| |||||||||| ||||||||||| ||||||||||||||| || Sbjct 465 AACCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAACAGCTCACTGGT 523 Query 477 C 477 | Sbjct 524 C 524 >seq37825 Length=1228 Score = 306 bits (338), Expect = 1e-80 Identities = 364/482 (76%), Gaps = 14/482 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTA---GACCCGAAACCAAGTGATCTACCC 58 |||||| ||| |||||| ||| | | | |||| ||||||||||| | |||||| | Sbjct 391 CGAGTCTGAATAGGGCGCCAGA-GTTTGATGTATTAGACCCGAAACCCGGCGATCTAGGC 449 Query 59 ATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAA 118 ||| ||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||| Sbjct 450 ATGACCAGGATGAAGGTGCGGTAACACGCACTGGAGGTCCGAACCGATTAACGTTGAAAA 509 Query 119 ATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTC 178 ||| ||||||| |||| |||||||||||||| || ||| | ||||||||||||||| Sbjct 510 GTTACCGGATGAGTTGTGTTTAGGGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGTTC 569 Query 179 TCTCCGAAAACTATTTAGGTAGTGCCTCAAG-TATCACCATCGGGGGTAGAGCACTGTTA 237 || ||||||||||| |||||||||||| || | ||| | ||||||||||||||| | Sbjct 570 TCCGCGAAAACTATTGAGGTAGTGCCTCGAGCGAATACCGTAGGGGGTAGAGCACTG-GA 628 Query 238 TGGCT-AGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTT 296 ||| | ||||||| | ||| |||||| | |||||||||||| | | ||| Sbjct 629 TGGATGCGGGGGTC-GCGAGACCTACCAACTCTAACCAAACTCCGAATACCTACGAGTAC 687 Query 297 TAC-CGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 ||| || | || || ||| |||||||||||||||| | | ||| || | || || Sbjct 688 TACTCGGGAGACAGACGGC--GGGTGCTAAGGTCCGTCGTCAAAAGGGAAACAGCCCTGA 745 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | ||||||||| ||| || | | |||||| | || | || | | | || | Sbjct 746 CCTACAGCTAAGGTCCCCAAGTCATCACTAAGTGGGA--AAGCATGTGGAACTTCCAAAA 803 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || |||||||| ||||||||||||||| | Sbjct 804 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAACAGCTCACTGG 862 Query 476 TC 477 || Sbjct 863 TC 864 >seq53099 Length=925 Score = 304 bits (336), Expect = 4e-80 Identities = 297/378 (79%), Gaps = 6/378 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 381 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 322 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 321 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTACCGTTGAAAAGT 262 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 261 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 202 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 201 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 142 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 141 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 82 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 81 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 24 Query 358 ATCAGCTAAGGCCCCGAA 375 |||||||||| ||| || Sbjct 23 GTCAGCTAAGGTCCCAAA 6 >seq26321 Length=812 Score = 235 bits (260), Expect = 2e-59 Identities = 194/234 (83%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 21 AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGT 80 ||| ||| ||| ||||||||||||| |||||||| |||||| |||| ||||||| || Sbjct 580 AGTTGCTAGGTATAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGAGT 639 Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 |||| ||||||| ||||||| ||||| |||||||| |||| |||||| ||||| | Sbjct 640 AACATCAACTGGAGGACCGAACCGACTAACGTTGAAAAGTTAGCGGATGACTTGTGGCTG 699 Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 |||||||||||| || ||||| ||| ||||||||||||| |||||| |||||||||||| Sbjct 700 GGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAATCTATTTAGGTAG 759 Query 201 TGCCTC--AAGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCAT 252 ||||| | | || |||| |||||||||||||||||| |||||||||||||| Sbjct 760 AGCCTCGGACGAAT-TCCATTGGGGGTAGAGCACTGTTAAGGCTAGGGGGTCAT 812 >seq26967 Length=160 Score = 104 bits (114), Expect = 8e-20 Identities = 119/157 (76%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 222 GGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTA-CCAAACCATTGCAAACTCC 280 |||||||||||||| |||||||||||||| ||||||| |||| || |||||||||| Sbjct 1 GGGTAGAGCACTGTGTCGGCTAGGGGGTCATCCCGACTTAACCAACCCGATGCAAACTCC 60 Query 281 GAATGCGCATCAGTTTTACCGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGA 338 |||| | | ||||||| | |||||| || ||| ||||||||| |||||| | Sbjct 61 GAATACCAGTAAGTTTTATCACGGGAGACAGACGGC--GGGTGCTAACGTCCGTCGTGAA 118 Query 339 GAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAA 375 |||| || || || ||| ||||||||| ||| || Sbjct 119 GAGGGAAACAACCCAGACCGCCAGCTAAGGTCCCAAA 155 >seq71608 Length=1524 Score = 89.7 bits (98), Expect = 2e-15 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 395 AACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAA 454 ||||| || || ||| |||||||||||| |||||||| |||||||||| | |||||| Sbjct 12 AACGATGTGGGAAGGCTTAGACAGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAA 70 Query 455 GAGTGCGTAACAGCTCACTAGTCGAG 480 || |||||| ||||||||||||||| Sbjct 71 GAAAGCGTAATAGCTCACTAGTCGAG 96 >seq36989 Length=346 Score = 82.4 bits (90), Expect = 3e-13 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||||||||||| |||||||| |||||||||| | |||||||| |||||| |||||||| Sbjct 346 GACAGCTAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACT 288 Query 474 AGTCGAG 480 ||||||| Sbjct 287 AGTCGAG 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1684146072576