Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq71608 340 6e-91 seq122253 336 7e-90 seq10961 149 2e-33 seq117644 84.2 7e-14 >seq71608 Length=1524 Score = 340 bits (376), Expect = 6e-91 Identities = 421/568 (74%), Gaps = 20/568 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| ||||||||||||||| | ||| ||| ||| |||| || ||| |||| | Sbjct 1349 TCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATACTCTACGACC-GATTTC 1291 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| | ||||| | | |||||||||| ||| ||||| | |||||||| Sbjct 1290 CGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTACTCTTTAGGAGGAGA-CCGCCCCA 1232 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCA 179 || ||||||||||||| |||||||| | | || ||| | || || |||||| || Sbjct 1231 GTCAAACTACCCACCATACACTGTCCTCGATCCGGATAACGGACCTGAGTTAGAA--CCT 1174 Query 180 CTACGGT--CAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCAT 237 | | | | ||| |||||||||||| | |||||| ||| |||| ||| ||| Sbjct 1173 CAAAGTTGCCAGGGTGGTATTTCAAGGTTGGCTCCACGCGAACTGGCGTCCACGCTTCAA 1114 Query 238 AGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGT 297 || |||||||||||||||||||| | | || ||| | | |||||||||| ||||| Sbjct 1113 AGCCTCCCACCTATCCTACACAAGCAAATTCAAAGTCCAGTGCAAAGCTATAGTAAAGGT 1054 Query 298 CC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGA-GCATCTTTACTCGTACTGCAATTTC 355 | |||||||||| |||| |||||| || || ||||||| || | | ||||||| Sbjct 1053 TCACGGGGTCTTTCCGTCTAGCCGCG-GATACACTGCATCTTCACAGCGATTTCAATTTC 995 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTT 415 || | | || ||| |||||||| | |||||||||||||||||||||||||||||| Sbjct 994 ACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTT 935 Query 416 ACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGG 475 ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| Sbjct 934 ACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGG 875 Query 476 CTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGC 535 |||| || | || || | || ||| || | |||||||||| || Sbjct 874 CTTCGATCAAGAGCTTCGC----------GTTAGCTAACCCCATCAATTAACCTTCCGGC 825 Query 536 ACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||||||||||||||| || ||||| || Sbjct 824 ACCGGGCAGGCGTCACACCCTATACGTC 797 >seq122253 Length=872 Score = 336 bits (372), Expect = 7e-90 Identities = 416/567 (73%), Gaps = 23/567 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| ||||||||||||| || ||| ||| || ||||| | || | || | Sbjct 100 TCGACTTGTCAGTCTCGCAGTCAGGCGGGCTTATGCCATTGCACTCTAACAGACGGTTTC 159 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 ||||| ||||| ||| ||| ||||||||||||| ||| ||||| | ||||||||| Sbjct 160 CAACCGTCCTGAGCCCACCATTGCGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCA 218 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCC 178 || ||||||||| ||| | ||||| | |||| | ||||| | |||||||| ||| Sbjct 219 GTCAAACTACCCGCCACAGAGGGTCCCTGATCCAGTTTCATGGATCGAGGTTAGACATCA 278 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| ||||||||||| | | | |||||| | || ||| ||| ||| | Sbjct 279 GAAAACAACAGGGTGGTATTTCACCTATGGCTCCACGTCAGCTGGCGCCAACGCTTCAAA 338 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | ||||||||||| ||||||| | || ||||||| | ||||| ||| ||||| Sbjct 339 GCCTCCCACCTATGCTACACAGTTCTTTCCTAATGCCACTCTGAAGCTGCAGTAAAGGTG 398 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| ||||| ||| | ||||||| || | | | ||||||| | Sbjct 399 CACGGGGTCTTTCCGTCTAACCGCGGGAACCCCGCATCTTCACGGGGAATTCAATTTCGC 458 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | || ||| | ||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 459 TGAGCATGTCCTGGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 518 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| Sbjct 519 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCTGGGCT 578 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 ||| || || | | | ||| ||| |||||||||| |||| Sbjct 579 TCATTT----------CAGAGCTTG---------CACCCCTCCACTTAACCTTCAGGCAC 619 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||| || ||||| ||| Sbjct 620 CGGGCAGGCGTCAGGCCCTATACGTCG 646 >seq10961 Length=594 Score = 149 bits (164), Expect = 2e-33 Identities = 150/197 (76%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 426 ||| |||||||| || | ||||| ||||||||||||||||||||||||||||||||| Sbjct 590 GGTGGAGACAGCGTGGCCATGGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGG 531 Query 427 AATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACC 486 |||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || | Sbjct 530 AATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAG 471 Query 487 CGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGC 546 || || | || ||| || | |||||||||| |||||||||||| Sbjct 470 AGCTTCGCTTAC----------GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGT 421 Query 547 GTCAGTCCGTATACCTC 563 |||| || ||||| || Sbjct 420 GTCACACCCTATACGTC 404 >seq117644 Length=450 Score = 84.2 bits (92), Expect = 7e-14 Identities = 183/263 (70%), Gaps = 12/263 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| ||||||||||||| || ||| ||| || |||||| | |||| | Sbjct 256 TCGACCTGTCAGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCAACGATCGATTTCT 197 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || ||||| ||||| | ||||||||||||| ||||| ||| |||| ||||| Sbjct 196 GGCCGATCTGAGCCTACCTTCGCGCGCCTCCGTTACCATTTGG--AGGCGACCG-CCCAG 140 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG--ATCATGGGCCAAGGTTAGATATCC 178 | |||||||| ||| || || |||| || | ||| ||| | ||||||||||| Sbjct 139 -TCAACTACCCGCCA--CAGTGGTCCCAGTCCCGGTTTCACGGGACGTGGTTAGATATCA 83 Query 179 ACTACGGTCAGAGTGGTATTTCAA-CAACGACTCCACAACCACTAGCGTGGC-CGCATCA 236 || || || ||||||||| | |||||||| ||| |||| | || ||| Sbjct 82 GGAACAACAAGGGT-GTATTTCAAGGGTTGGCTCCACAAGGACTGGCGTCCCGTGCTTCA 24 Query 237 TA-GTCTCCCACCTATCCTACAC 258 | | ||||||||||| |||||| Sbjct 23 AACGCCTCCCACCTATGCTACAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1696904754944