Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq97994 264 2e-68 seq274740 174 3e-41 seq110105 149 1e-33 seq263711 129 1e-27 >seq97994 Length=216 Score = 264 bits (292), Expect = 2e-68 Identities = 187/214 (87%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 5 GCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGTGGAA 64 |||||||||||||||||||||||||||||||| ||||||| || | ||||||||| Sbjct 1 GCTGGCACGGAGTTAGCCGATGCTTATTCATACGGTACATGCAGGGAGCCACACGTGACT 60 Query 65 GGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACT 124 | |||||||| ||||||||||||||||||||| || || ||||||||||||| ||| Sbjct 61 CTTGTTATTCCCGTATAAAAGAAGTTTACAATCCATAAGACAGTCATCCTTCACGCGACT 120 Query 125 TGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGT 184 |||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 121 TGGCTGGTTCAGGCTCTCGCCCATTGTCCAATATTCCTCACTGCTGCCTCCCGTAGGAGT 180 Query 185 TTGGACCGTGTCTCAGTTCCAATGTGGGGGACCT 218 ||| |||||||||||| ||| ||||||||| || Sbjct 181 CTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCT 214 >seq274740 Length=1326 Score = 174 bits (192), Expect = 3e-41 Identities = 154/191 (81%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| |||| Sbjct 406 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCAT 348 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 347 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 288 Query 209 TGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCC 268 || || | |||||||||| | || ||||| | || |||| ||| ||||||| || Sbjct 287 TGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCCCACC 228 Query 269 TACTACCTAAT 279 |||| ||||| Sbjct 227 AACTAGCTAAT 217 >seq110105 Length=1201 Score = 149 bits (164), Expect = 1e-33 Identities = 208/287 (72%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGT-ACATACAA--GCTC 52 ||||||||||||||||||||||| ||||| ||| ||| || ||| | || | | Sbjct 343 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGTTGCTAACGTCACAGATAACGGGTA 284 Query 53 CCACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATC 112 | ||| | ||| || | | |||| ||||||| ||| || ||||| || Sbjct 283 TTAACCGTT--ACCCTTTCCTCACAACTGAAAGTGCTTTACAACCCGAAGG-CCTTCTTC 227 Query 113 CTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCC 172 ||||| | |||||| |||| | | |||||| ||||||||| |||||||||| Sbjct 226 ACACACGCGGCATGGCTGCATCAGGGTTGCCCCCATTGTGCAATATTCCCCACTGCTGCC 167 Query 173 TCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCC 232 |||||||||||| ||| |||||||||||| ||| ||||| || |||||||||||||| Sbjct 166 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCTTCCTCTCAGAACAG 107 Query 233 CTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||||| | || |||| ||| ||||| | || |||| ||||| Sbjct 106 CTAGAGATCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAAT 60 >seq263711 Length=515 Score = 129 bits (142), Expect = 1e-27 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||| ||||||| | ||||||| || ||||| | ||| | ||||||| Sbjct 138 GGCTGCTGGCACGGAATTAGCCGGTCCTTATTCGTATGGTACCTGCAAACAATCACACGT 79 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | | ||||| ||| || ||||| ||||||||| || ||| || ||||||| ||||| Sbjct 78 GATTGACTTTATCCCCATACAAAAGCAGTTTACAACCCATAGGGCCGTCATCCTGCACGC 19 Query 121 TACTTGGCTGGTTCAG 136 |||||||||||||||| Sbjct 18 TACTTGGCTGGTTCAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065349977728