Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq6532 473 4e-131 seq262164 448 1e-123 seq44184 286 1e-74 seq7195 138 3e-30 seq298836 113 1e-22 seq52361 109 2e-21 seq292676 105 2e-20 seq268828 86.0 2e-14 >seq6532 Length=9725 Score = 473 bits (524), Expect = 4e-131 Identities = 424/516 (82%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 8709 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 8768 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8769 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 8828 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 8829 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGACCATGGT 8888 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || |||||||| Sbjct 8889 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGC 8948 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCA-AGGAGCC--CCGAAG-GG 293 | | |||| |||||| | | ||||| || |||||| || || ||| || | Sbjct 8949 GCGAGGGCCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGGTACCGGCCGGAGCCG 9008 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| |||| |||||||| ||| ||||| | |||||| | || | ||||||| Sbjct 9009 GGCTGGTCTTTTTCCTAATAAAAGCACGCCTTCTGGAGAGTCGGCGCTTGGACGCATGTA 9068 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||||||||| || ||| ||| ||| ||| |||| Sbjct 9069 TTAGCTCTAGAATTACCACAGTTATCCATGT-CCGGGGGACTCGATCCAATGAACCATAA 9127 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||||||||||| ||||| ||| || | || |||| || ||||||||||| Sbjct 9128 CTGATTTAATGAGCCATCCGCAG-TTCGCTCGA-GGA--GCTTGCACGAAGACATGCATG 9183 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 9184 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 9219 Score = 470 bits (520), Expect = 4e-130 Identities = 424/516 (82%), Gaps = 18/516 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 6375 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 6434 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6435 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 6494 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| Sbjct 6495 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGACCATGGT 6554 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || |||||||| Sbjct 6555 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGC 6614 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCA-AGGAGCC--CCGAAG-GG 293 | | |||| |||||| | | ||||| || |||||| || || ||| || | Sbjct 6615 GCGAGGGCCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGGTACCGGCCGGAGCCG 6674 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| |||| |||||||| ||| ||||| | |||||| | || | ||||||| Sbjct 6675 GGCTGGTCTTTTTCCTAATAAAAGCACGCCTTCTGGAGAGTCGGCGCTTGGACGCATGTA 6734 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||| ||||| || ||| ||| ||| ||| |||| Sbjct 6735 TTAGCTCTAGAATTACCACAGTTAT-CATGT-CCGGGGGACTCGATCCAATGAACCATAA 6792 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||||||||||||||| |||||||||| || | || |||| || ||||||||||| Sbjct 6793 CTGATTTAATGAGCCA-TCGCAGTTTCGCTCGA-GGA--GCTTGCACGAAGACATGCATG 6848 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 6849 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 6884 Score = 127 bits (140), Expect = 6e-27 Identities = 89/100 (89%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 9553 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 9612 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99 |||||||||||||| ||||||||||||||||||||||||| Sbjct 9613 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCT 9652 Score = 104 bits (114), Expect = 7e-20 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 9391 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 9450 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGC 86 |||||||||||||| |||||||||||| Sbjct 9451 TCCCCGTGTCGGGAGTGGGTAATTTGC 9477 >seq262164 Length=90925 Score = 448 bits (496), Expect = 1e-123 Identities = 420/516 (81%), Gaps = 20/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 26485 GTACTCATTCCA-TTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 26543 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 26544 TCCCCGTGTCGGGAGTGGGTAATT-GCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 26602 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| | || ||||||||||| |||||||| Sbjct 26603 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGA-TCTCCGTTACCCGTGACGACCATGGT 26661 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || || |||||||| Sbjct 26662 AGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCGGC 26721 Query 240 TC-AAGGCCATGCGATTCGTTAAGTTATTATGA-ATCACCA-AGGAGCC--CCGAAG-GG 293 | | |||| |||||| | | ||||| || |||||| || || ||| || | Sbjct 26722 GCGAGGGCCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTGGTACCGGCCGGAGCCG 26781 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCCG--AAGTCGGGGTTTTTA-GCATGTA 350 | |||| |||| |||||||| ||| ||||| | |||||| | || | ||| ||| Sbjct 26782 GGCTGGTCTTTTTCCTAATAAAAGCACGCCTTCTGGAGAGTCGGCGCTTGGACGCAGGTA 26841 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--ATCAAATAAACGATAA 408 ||||||||||||||||||| ||||||||||| || ||| ||| ||| ||| |||| Sbjct 26842 TTAGCTCTAGAATTACCACAGTTATCCATGT--CCGGGGACTCGATCCAATGAACCATAA 26899 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||||||| ||||||| ||||||||| || | || |||| || ||||||||||| Sbjct 26900 CTGATTTAAGGAGCCATCCGCAGTTTCGCTCGA-GGA--GCTTGCACGAAGACATGCATG 26956 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| Sbjct 26957 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 26992 Score = 441 bits (488), Expect = 2e-121 Identities = 424/531 (80%), Gaps = 31/531 (6%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 7470 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 7529 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7530 TCCCCGTGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 7589 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT--TGATACCATG 177 ||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||| Sbjct 7590 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGTTACCCGTGACGCCACCATG 7649 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||||| || | ||||||||||||||||||||||||| ||| ||| || || |||||| Sbjct 7650 GTAGGCGCATAACGTACCATCGAAAGTTGATAGGGCAGACATTCGAAGGATCCGTCGCCG 7709 Query 238 GCTCAAGG-CCATGCGATTCGTTAAGTTATTATGA-ATCACCA--------AGGA---GC 284 | | ||| || |||||| | | ||||| || |||||| ||| || Sbjct 7710 GTGCCAGGACCGTGCGATCGGCTGTGTTATCCAGAGTTCACCAGTCTTTGCCGGACACGC 7769 Query 285 C-----CCGAAGGGCGTTGGTTTTTTATCTAATAAATACAC-CCCTTCCG--AAGTCGGG 336 | ||| | | |||| || | |||||||| ||| | |||| | |||||| Sbjct 7770 CGTGAGACGAGCCGGGCTGGTCTTGTTCCTAATAAAAGCACGCTCTTCTGGAGAGTCGGC 7829 Query 337 GTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT--A 393 | || | |||||||||||||||||||||||||| ||||||||||| || ||| | Sbjct 7830 GCTTGGACGCATGTATTAGCTCTAGAATTACCACAGTTATCCATGT-CCGGGGGACTCGA 7888 Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTAT 453 || ||| ||| ||||||||||||||||||||| ||||||||| || | || |||| Sbjct 7889 TCCAATGAACCATAACTGATTTAATGAGCCATCCGCAGTTTCGCTCGA-GGA--GCTTGC 7945 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7946 ACGAAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 7996 >seq44184 Length=306 Score = 286 bits (316), Expect = 1e-74 Identities = 260/318 (82%), Gaps = 20/318 (6%) Strand=Plus/Minus Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 || |||||||||||| | ||||||||||||| || ||||||||| |||| ||||||||| Sbjct 306 TCTCCGTTACCCGTTAAAGCCATGGTAGGCCAATACCCTACCATCCAAAGCTGATAGGGC 247 Query 214 AGAAATTTGAATGAACCATCG--CCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGA 271 ||||| |||||||| ||||| ||| ||| || |||| || |||||||||||| Sbjct 246 AGAAACTTGAATGATGCATCGATCCG----AAG---AT-CGATCCGA-AAGTTATTATGA 196 Query 272 ATCACCAAGGAGCCCCGAAGG-----GCGTTGGTTTTTTATCTAATAAATACACCCCTTC 326 |||||| | | || | | | || ||||||| ||||||||||||||||||||| Sbjct 195 ATCACCT-GAATCCGGGGATGACCCCGCATTGGTTTCC-ATCTAATAAATACACCCCTTC 138 Query 327 CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA 386 ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| || Sbjct 137 GTGAGTCGGGGTTTGATGCATGTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGCAA 78 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA- 445 | || ||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| Sbjct 77 -GAACCATCAAATAAACTATAACTGATATAATGAGCCATTCGCAGTTTCACAGTATAGAT 19 Query 446 TTGCTTATACTTAGACAT 463 ||| |||||||||||||| Sbjct 18 TTGTTTATACTTAGACAT 1 >seq7195 Length=80 Score = 138 bits (152), Expect = 3e-30 Identities = 78/79 (99%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 77 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTC 21 Query 137 CGGAATCGAACCCTAATTC 155 |||||||||||||| |||| Sbjct 20 CGGAATCGAACCCTGATTC 2 >seq298836 Length=69 Score = 113 bits (124), Expect = 1e-22 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 101 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1 CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCTCCGT 60 Query 161 TACCCGT 167 ||||||| Sbjct 61 TACCCGT 67 >seq52361 Length=103 Score = 109 bits (120), Expect = 2e-21 Identities = 86/101 (85%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 ||| ||| ||| ||||||||||||||||||||| ||||||||| || | || |||| Sbjct 98 ATCCAATGAACCATAACTGATTTAATGAGCCATCCGCAGTTTCGCTCGAG-GA--GCTTG 42 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 || |||||||||||||||||||||||||||||||||||| Sbjct 41 CACGAAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 1 >seq292676 Length=109 Score = 105 bits (116), Expect = 2e-20 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 ||| ||| ||| ||||||||||||||||||||| ||||||||| || | || |||| Sbjct 96 ATCCAATGAACCATAACTGATTTAATGAGCCATCCGCAGTTTCGCTCGAG-GA--GCTTG 40 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATA 491 || |||||||||||||||||||||||||||||||||| Sbjct 39 CACGAAGACATGCATGGCTTAATCTTTGAGACAAGCATA 1 >seq268828 Length=154666 Score = 86.0 bits (94), Expect = 2e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4855 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 4901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1505524519424