Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq295142 280 1e-70 seq305029 226 2e-54 seq129531 140 3e-28 seq256343 104 2e-17 seq205252 95.1 1e-14 seq289945 91.5 1e-13 seq33635 82.4 6e-11 >seq295142 Length=2525 Score = 280 bits (310), Expect = 1e-70 Identities = 598/879 (68%), Gaps = 17/879 (2%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| | || || || || | ||||||||| | ||| | || || |||| | ||| Sbjct 2395 GAGAACTCCCGACGCTTTGTCATCTTCCCCATCCAATATCATGACATCTGGCAATTCTAC 2336 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || |||||||| || ||||||||||||| |||||||||||| | ||||||||| || | Sbjct 2335 AAGAAGGCGGAGGCATCCTTCTGGACGGCCGAGGAGGTCGATCTTTCCAAAGACTTGGAC 2276 Query 61162 GACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 | |||| ||| | | || | ||| || ||||| ||||| | || ||| Sbjct 2275 CATTGGGCCAAGC--TCACAGA-CAATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTC 2219 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA-TTGGAACGTTTCGCGCAGGAGGT 61277 || || || || ||||| ||||||||||| || ||| || |||| || || || || Sbjct 2218 TTCGCTGCAAGCGATGGTATTGTCAATGAGAACTTGGTTGAAAGGTTTAGC-CAAGAAGT 2160 Query 61278 GCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTC 61337 ||| | | |||||| | ||||||||||| ||||||||||| || || || ||||||| Sbjct 2159 GCAGATTGCAGAGGCGAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCACTC 2100 Query 61338 GGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATT 61397 || ||||| | |||||||| || ||||||| || || | | || | Sbjct 2099 AGAAATGTATTCATTACTCATCGACACATACATCAAAGATTCAGCTCAGAGAGATTACCT 2040 Query 61398 GTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG 61457 ||||||||| | ||||| || ||| || | ||||||| | ||||| | | || Sbjct 2039 CTTCAATGCCGTTGAGACCATGCCGTGTGTCACCAAGAAAGCGCAATGGGCGCTGGACTG 1980 Query 61458 GATCACCAG-TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| || ||| || || |||||| | | | | || || || | || |||| Sbjct 1979 GATCAGTAGCGACAGCGCAGAC-TTTGGTACAAGGGTCGTTGCTTTCGCAGCAGTAGAGG 1921 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||| || || |||||||||||||| ||| | |||||||| || || |||| Sbjct 1920 GCATCTTCTTCTCGGGTTCCTTTGCCGCAATCTTCTGGCTCAAGAAACGAGGTCTGATGC 1861 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTT 61635 | || || |||||| ||||| | || | || | |||||||| | || || || ||| Sbjct 1860 CAGGGCTTACCTTCTCAAATGAACTCATCAGCA-GAGACGAGGGTCTTCACTGCGACTTT 1802 Query 61636 GCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAG 61695 || | || | ||||| | |||| || || ||||| | | ||| | | Sbjct 1801 GCATGTCTGATGTTCAAGC---ATCTCAACAACAAGCCATCGGAAGCTCATGTCCAGGGG 1745 Query 61696 ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCA 61755 || | | || ||||| | ||||||||||| || ||||| |||||| | ||| ||| Sbjct 1744 ATCATCAGGGAAGCGGTTAAGATCGAACAGGAGTTCCTGACGGACGCTCTACCCTGCTCT 1685 Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 |||||||| |||||| || || ||| | || || || ||||| |||||| | || Sbjct 1684 CTCATCGGTATGAATGCCGGCCTCATGAAGACCTACATCGAGTTTGTAGCCGACAGGTTG 1625 Query 61816 TTGGTCGA-TTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 | || || ||| | | || ||||| ||| | |||||||| || |||||||| Sbjct 1624 CTTGTTGAGCTTGACTGT-AAAAAGATCTGGAATGTCGAGAACCCATTCGACTTCATGGA 1566 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 | || |||||||| || |||||||| || || ||||| Sbjct 1565 AAACATCTCGCTGGAAGGAAAGACGAACTTCTTTGAGAA 1527 >seq305029 Length=127772 Score = 226 bits (250), Expect = 2e-54 Identities = 369/529 (70%), Gaps = 2/529 (0%) Strand=Plus/Minus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| |||||| | |||||| || || || || ||||| |||||||| ||||| || Sbjct 94092 CTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCC 94033 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 ||| || ||||| |||||||| | || || |||||||||| ||| || || || || Sbjct 94032 CAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTACAGCATATATGGGGTACC 93973 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC 66216 ||||| ||| || ||||||||||| | ||| ||||| | ||||||| || | | | Sbjct 93972 AGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCATTGT-CTTCC 93914 Query 66217 CGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTT 66275 |||| | || | || || | |||||||| | ||| || || ||||| || | Sbjct 93913 TACCCTTTCCTTCTTTCTCATACTTCTCGTAGAGCTTTTCAAATTCATCTCCCCAAACGT 93854 Query 66276 CGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACAC 66335 || | || || | || || ||||| || | ||| |||||||| ||| || | Sbjct 93853 TTTCTAGGCCAGGGCATTCATGAGGGCACATGAGGGTCCAGTCACCATCAGCTTCAACCC 93794 Query 66336 GACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT 66395 |||||| |||||||| ||||||||||| ||||| ||||| || |||| || |||| Sbjct 93793 TCTTCATAAAGAGATCAGGGATCCAGAGGGCATAGAACAGATCTCGGGCTCTCTGTTCCT 93734 Query 66396 CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455 | ||||||| || || |||| | ||| ||| ||| || ||||||||||| || | Sbjct 93733 CCTTGCCGTGGTTCTTCTTACAGTCTAAGAAATCATGGATATCAGCATGCCATGGCTCTA 93674 Query 66456 GGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACAT 66515 |||||||||| || | || ||| || ||| || || || || || | ||| || Sbjct 93673 GGTAGATGGCAAAGGCACCAGGACGCTTATTGCCTCCCTGATCTACATATCTAGCTGTAT 93614 Query 66516 TGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 ||||| | ||||| | ||| |||| | || || || |||||||| || Sbjct 93613 TGTTGTACACACGAAGCATTGGTAATAAACCATTGGAGTTGCCATTTGT 93565 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 ||| |||||| | |||||| || || || || ||||| |||||||| ||||| || Sbjct 95787 CTCATCAGGACTTGAATACTCTACGATCTCTGTACACAGGTTACTGCATTTGATGGTTCC 95728 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 ||| || ||||| |||||||| | || || |||||||| | ||| || || || || Sbjct 95727 CAAGTTTTGTTGGTTACTCTTCCTGTTACAATGGTCCTTGTAGAGCATATATGGGGTACC 95668 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCA 66206 ||||| ||| || ||||||||||| | ||| ||||| | ||||||| Sbjct 95667 AGTCTCTGTTTGAGATTCAATGATGGCATACCACAGAGCCTGGGCCTTCA 95618 >seq129531 Length=564 Score = 140 bits (154), Expect = 3e-28 Identities = 349/524 (67%), Gaps = 7/524 (1%) Strand=Plus/Plus Query 61288 GAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTAC 61347 ||||| | ||||||||||| ||||||||||| || || || ||||||| || ||||| Sbjct 16 GAGGCAAGGTGTTTCTACGGGTTCCAGATTGCAATTGAAAACATCCACTCAGAAATGTAT 75 Query 61348 AGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCC 61407 | |||||||| || ||||||| || | || | | || | ||||||||| Sbjct 76 TCATTACTCATCGACACATACATCAAAGATCCAGCTCAGAGAGATTACCTCTTCAATGCC 135 Query 61408 ATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG- 61466 | ||||| || || || | |||||| | ||||| || | ||||||| || Sbjct 136 GTTGAGACCATGCCATGCGTCACCAAGAAAGCACAATGGGCGTTGGACTGGATCAGTAGC 195 Query 61467 TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 ||| || || ||||| | | | | || || || | || ||||| | || || Sbjct 196 GACAGCGCAGAC-TTTGGCACAAGGGTCGTTGCTTTCGCAGCAGTAGAGGGCATCTTCTT 254 Query 61527 CAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGAC 61586 | || || ||||| || ||||| ||| | |||||||| || || ||||| || || || Sbjct 255 CTCGGGTTCCTTTGCTGCGATCTTCTGGCTCAAGAAACGAGGTCTGATGCCAGGGCTTAC 314 Query 61587 CTTCAGCAATGAGTTGAT-ATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 |||| ||||| | || | || | |||||||| | || || || ||||| | || Sbjct 315 CTTCTCAAATGAACTCATCAGCA-GAGACGAGGGTCTTCACTGCGACTTTGCCTGTCTGA 373 Query 61646 TATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTG 61705 | ||||||| |||| || || ||||| | | ||| | ||| | | | Sbjct 374 TGTTCAAAC---ATCTCAACAACAAGCCATCGGAAGCTCATGTCCAGGGGATCATCAGGG 430 Query 61706 AGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCA 61765 | ||||| | ||||||||||| || ||||| ||||| | ||| ||| |||||||| | Sbjct 431 AAGCGGTCAAGATCGAACAGGAGTTCCTGACGGACGCCCTACCCTGCTCTCTCATCGGTA 490 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGAC 61809 ||||| || || ||| | || || || ||||| |||||| Sbjct 491 TGAATGCCGGCCTCATGAAGACCTACATCGAGTTTGTGGCCGAC 534 >seq256343 Length=109058 Score = 104 bits (114), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| | ||| | || || |||| | ||| Sbjct 29484 GAGAACCCCCGGCGCTTCGTCATTTTCCCCATCCAATATCACGACATCTGGCAATTCTAC 29543 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 || ||||| || || ||||||||||||| |||||||||||| | ||||||||| || | Sbjct 29544 AAGAAGGCCGAGGCATCCTTCTGGACGGCCGAGGAGGTCGATCTTTCCAAAGACCTGGAA 29603 Query 61162 GACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTC 61218 | |||| ||| | | || | ||| || ||||| ||||| | || ||| Sbjct 29604 CATTGGGCCAAGC--TCACAGA-CAATGAGAGGCACTTCATCTCGCATGTTCTTGCTTTC 29660 Query 61219 TTTGCCGCTTCGGACGGTATCGTCAATGAGAA 61250 ||||| || || ||||||||||||||||| Sbjct 29661 TTTGCTGCCAGCGATGGTATCGTCAATGAGAA 29692 >seq205252 Length=316 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| || || || ||||| | ||||||||| | ||| | || || |||| | ||| Sbjct 131 GAGAACCCCCGGCGCTTCGTCATTTTCCCCATCCAATATCACGACATCTGGCAATTCTAC 190 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 || ||||| || || ||||||||||||| |||||||||||| | ||||||||| || Sbjct 191 AAGAAGGCCGAGGCGTCCTTCTGGACGGCCGAGGAGGTCGATCTTTCCAAAGACCTG 247 >seq289945 Length=532 Score = 91.5 bits (100), Expect = 1e-13 Identities = 249/376 (66%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 ||||||||||| | |||||||| | || | ||| || ||||| || ||||| || Sbjct 411 GTGAACTGGATAGGGTTAGCAGCTGGGCGTGTGCGAAGGTAATACATACCCGTCTTCAGA 352 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || | | ||| ||| |||| ||||| | || || |||| || || || || | Sbjct 351 CCCGATCTCCATGCAAAGAAGTGCATACTGGTTAGCTTGCCATAGTTTGGTTCAGCAATG 292 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || ||||| | || ||||||||||| ||||| ||| || || ||||||| | ||| Sbjct 291 TGAATATTAAGTGATTGACTCTGATCAATGTATGCACCGCGGTCAACAGCCATCTGAATA 232 Query 65264 ATACGACGTC-CCGATATCTCCCAGACGGTCTTGTAC-AGGCGACGTACCTCAATTGGAA 65321 | | | | || || |||||||| || ||||| ||| | || | | ||| ||| | Sbjct 231 ACA-GTCTTCTGTGAGATCTCCCAAACAGTCTTATACAATGCCTTG-ATGTCATCTGGGA 174 Query 65322 TCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTG 65381 | ||||| ||| | || ||| | ||||| | ||| |||| || | Sbjct 173 TTGATGGAATGTTCTGAATAGATCCAGAGTGAGCAATGAGCATATTCTTCATCTCATCAG 114 Query 65382 ACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGC 65441 |||||| ||||| ||| |||| | || | ||| |||||| ||| || ||||| | Sbjct 113 ACCACAGACCCATGTCGGTAAGGTCCCTAAGAAGATGATGATTGACGACCTGAAACTCTC 54 Query 65442 CGGACAGTACACGACG 65457 | || || |||||||| Sbjct 53 CTGAAAGCACACGACG 38 >seq33635 Length=285 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| | || || ||||| | ||||||||| | ||| | || || |||| | ||| Sbjct 155 GAGAACTCCCGGCGCTTCGTCATCTTCCCCATCCAATATCACGACATCTGGCAATTCTAC 96 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 || |||||| | || ||||||||||||| |||||||| ||| | ||||||||| || Sbjct 95 AAGAAGGCG-AGGCATCCTTCTGGACGGCTGAGGAGGTTGATCTATCCAAAGACTTG 40 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396003946864160