Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq99992 152 7e-32 >seq99992 Length=792 Score = 152 bits (168), Expect = 7e-32 Identities = 264/379 (70%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 162455 TCTACCAAGCGAGCACCAGTGAGCTTTATGGGCTAGTTCAGGAGACACCCCAGAAAGAAA 162514 ||||||| ||| ||||||||| | | ||| ||||| |||| |||||| || || | Sbjct 708 TCTACCAGGCGTCTACCAGTGAGATGTTTGGCAAGGTTCAAGAGATACCCCAAAAGGAGA 649 Query 162515 CCACTCCAATGTATCCACGATCCCCTTATGGAGTTGCTAAACTATATGGGTTCTGGATCA 162574 |||| || | ||||| || ||||||||||| | || || || |||| || |||||||| Sbjct 648 CCACGCCCTTCTATCCCCGTTCCCCTTATGGTGCAGCCAAGCTGTATGCGTACTGGATCA 589 Query 162575 TCAAAAACTACAGGGAAAGCTATGACATACATGCCTCTAGCGGTATTCTATTCAATCACG 162634 | ||||| ||| ||| |||| |||| ||| | | ||||| |||||||| || | Sbjct 588 CGATAAACTTCAGAGAAGCCTATAACATGTTTGCTTGCAATGGTATCCTATTCAACCATG 529 Query 162635 AAAGCTCACGCAGAGGAGAGACGTTCGTCACACGCAAGATCGTCCGAGCCTTGTCCCGA- 162693 | ||| || | ||||| || || || || || | || ||| |||| ||| ||| Sbjct 528 AGAGCCCAAGGAGAGGTGAAACATTTGTGACCAGAAAAATCACAAGAGC--TGTTGCGAA 471 Query 162694 -ATTAGTGTGGGACTCCAAAGTGATCTACAACTTGGAAACCTCAATGCCCGACGTGACTG 162752 ||| | || | || || | ||| |||||||| | | | |||||| || Sbjct 470 GATTCACTTAGGTCAGCAGGAAGACTTGAGACTAGGAAACCTAGACTCACAACGTGATTG 411 Query 162753 GGGACACGCCAAAGACTACGTAGAGGCTATGTGGTTGATGCTTCAGCA-AGAGAAGCCAG 162811 |||||| || ||||| || ||||||| |||||| ||||| | || || | |||| |||| Sbjct 410 GGGACATGCTAAAGATTATATAGAGGCCATGTGGCTGATGTTACAACAGAAAGAA-CCAG 352 Query 162812 ATGATTATGTGATCGCAAC 162830 | || | ||| || ||||| Sbjct 351 AAGACTTTGTAATAGCAAC 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 688669213987440