Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4902 203 5e-50 seq2466 203 5e-50 seq1046 203 5e-50 seq890 203 5e-50 seq36771 147 3e-33 seq76060 104 4e-20 >seq4902 Length=494613 Score = 203 bits (224), Expect = 5e-50 Identities = 206/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 479331 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 479388 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 479389 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 479448 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||| ||| ||||| | ||| | |||||| | | |||||||||||||||||| Sbjct 479449 ACCCAACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGC 479507 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 479508 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 479565 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 479566 CGCCACTTGTCCCTCTAA 479583 >seq2466 Length=405557 Score = 203 bits (224), Expect = 5e-50 Identities = 206/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 205981 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 206038 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 206039 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 206098 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||| ||| ||||| | ||| | |||||| | | |||||||||||||||||| Sbjct 206099 ACCCAACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGC 206157 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 206158 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 206215 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 206216 CGCCACTTGTCCCTCTAA 206233 >seq1046 Length=1918858 Score = 203 bits (224), Expect = 5e-50 Identities = 206/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 11820 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 11763 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 11762 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 11703 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||| ||| ||||| | ||| | |||||| | | |||||||||||||||||| Sbjct 11702 ACCCAACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGC 11644 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 11643 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 11586 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 11585 CGCCACTTGTCCCTCTAA 11568 >seq890 Length=1148126 Score = 203 bits (224), Expect = 5e-50 Identities = 206/258 (80%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| | Sbjct 876996 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAATT-C 877053 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 877054 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 877113 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGA-CTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||| ||| ||||| | ||| | |||||| | | |||||||||||||||||| Sbjct 877114 ACCCAACCCTTCCGGGCAAGGATA-AGAGCACGTTGATTCCTTCAGTGTAGCGCGCGTGC 877172 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||| Sbjct 877173 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGG-CTAAA 877230 Query 239 AGGC-CATCTCCCTCGAA 255 | | | | |||||| || Sbjct 877231 CGCCACTTGTCCCTCTAA 877248 >seq36771 Length=294 Score = 147 bits (162), Expect = 3e-33 Identities = 103/115 (90%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||| ||| Sbjct 282 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAA-TTC 225 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA 115 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| Sbjct 224 CTCGTTAAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAA 170 Score = 86.0 bits (94), Expect = 9e-15 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 183 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAA 239 |||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 168 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAAA 112 >seq76060 Length=5805 Score = 104 bits (114), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| ||| Sbjct 159 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTT-ATGACTCGCGCTTACTGGGAA-TTC 102 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 |||||| | | || |||| ||| | ||||| | ||||| | | ||||| | || Sbjct 101 CTCGTTCATGGGGAAGAATTACAAGCCCCAATCCCTAGCACGAAGGAGGTTCAACGGGTT 42 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||| ||| ||| ||||| Sbjct 41 ACCCAACCCTTCCGGGCAAGG 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751397836470