Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq76060 165 5e-39 seq4902 102 5e-20 seq2466 102 5e-20 seq1046 102 5e-20 seq890 102 5e-20 >seq76060 Length=5805 Score = 165 bits (182), Expect = 5e-39 Identities = 109/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA-AATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||||| |||||||| ||| | ||| ||| | Sbjct 5744 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGAACGAGTCAATAATTA-AACGTCGTC 5686 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 5685 CGATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 5628 >seq4902 Length=494613 Score = 102 bits (112), Expect = 5e-20 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||| |||||| |||| |||||| |||| ||||||| ||| ||| || Sbjct 479860 GAACCCAAAAACTTTGGTTTCCCGTAAGCTGCCCGCCGAGTCAT--TGAAGCAACTCCGG 479917 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 479918 CGGATCGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 479976 >seq2466 Length=405557 Score = 102 bits (112), Expect = 5e-20 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||| |||||| |||| |||||| |||| ||||||| ||| ||| || Sbjct 206510 GAACCCAAAAACTTTGGTTTCCCGTAAGCTGCCCGCCGAGTCAT--TGAAGCAACTCCGG 206567 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 206568 CGGATCGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 206626 >seq1046 Length=1918858 Score = 102 bits (112), Expect = 5e-20 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||| |||||| |||| |||||| |||| ||||||| ||| ||| || Sbjct 11291 GAACCCAAAAACTTTGGTTTCCCGTAAGCTGCCCGCCGAGTCAT--TGAAGCAACTCCGG 11234 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 11233 CGGATCGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 11175 >seq890 Length=1148126 Score = 102 bits (112), Expect = 5e-20 Identities = 95/119 (80%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGAT--AACATCGC 58 ||||||||| |||||| |||| |||||| |||| ||||||| ||| ||| || Sbjct 877525 GAACCCAAAAACTTTGGTTTCCCGTAAGCTGCCCGCCGAGTCAT--TGAAGCAACTCCGG 877582 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | |||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||||| Sbjct 877583 CGGATCGCTAGTTGGCATCGTTTATGGTCAGAACTACGACGGTATCTGATCGTCTTCGA 877641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278184262620