Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq38889 349 6e-94 seq4902 226 5e-57 seq1046 226 5e-57 seq890 226 5e-57 seq2466 217 3e-54 >seq38889 Length=305 Score = 349 bits (386), Expect = 6e-94 Identities = 255/292 (87%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 19 CTTTCCTTCTGGGGATCCGC-ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTA 77 |||||||||| | | || |||| ||||| || |||| | ||||| | |||||||||| Sbjct 16 CTTTCCTTCTAGCTAACCTTTATGCACTTCATTGTGTGTACTGGGGATCTAGGACTTTTA 75 Query 78 CTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGAATAA 137 ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||| Sbjct 76 CTTTGAAAAAATTAGAGTGTTTAAAGCAGGCTTATGCTTGAATACATTAGCATGGAATAA 135 Query 138 TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGG 197 ||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 136 TAGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAAGTAATGATTAATAGG 194 Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | |||||| |||||||||||||||||||||| ||||||| ||||| Sbjct 195 GATAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTTAGATTTATGAAAGAC 254 Query 258 TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| |||||||||| || |||||||||||||||||||||| ||||||| Sbjct 255 TAACTTCTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 305 >seq4902 Length=494613 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 480256 TGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTC 480197 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| || || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 480196 AAAGCAGGCAATTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 480138 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||| | ||| | | ||||||||||| ||||| || |||||| | || Sbjct 480137 ATTTTGTTGGTTT-TCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGT 480079 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 480078 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 480019 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| || ||||||| || || Sbjct 480018 TGCCAAGAATGTTTTCATTAATCA-AGATCGAAAGTCAGAGG 479978 >seq1046 Length=1918858 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 10895 TGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTC 10954 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| || || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 10955 AAAGCAGGCAATTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 11013 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||| | ||| | | ||||||||||| ||||| || |||||| | || Sbjct 11014 ATTTTGTTGGTTT-TCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGT 11072 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 11073 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 11132 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| || ||||||| || || Sbjct 11133 TGCCAAGAATGTTTTCATTAATCA-AGATCGAAAGTCAGAGG 11173 >seq890 Length=1148126 Score = 226 bits (250), Expect = 5e-57 Identities = 223/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| | || |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 877921 TGCTCTTGATTGAGTGTCTCGGGTGGCCGGAACATTTACTTTGAAAAAATTAGAGTGTTC 877862 Query 100 AAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| || || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 877861 AAAGCAGGCAATTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 877803 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||| | ||| | | ||||||||||| ||||| || |||||| | || Sbjct 877802 ATTTTGTTGGTTT-TCGGAACTTGAGGTAATGATTAAGAGGGACAGACGGGGGCATTCGT 877744 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 877743 ATTACGGTGTTAGAGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATT 877684 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| || ||||||| || || Sbjct 877683 TGCCAAGAATGTTTTCATTAATCA-AGATCGAAAGTCAGAGG 877643 >seq2466 Length=405557 Score = 217 bits (240), Expect = 3e-54 Identities = 206/257 (80%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATACA 123 ||| | || ||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 206881 GCCGGAACATTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCAATTCGCCTGAATAAT 206822 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC--GC 181 |||||||||||| ||||||||| | |||||||||||||||||||| | ||| | | Sbjct 206821 GGTGCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACTTGA 206764 Query 182 CGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCT 241 ||||||||||| ||||| || |||||| | ||||| ||| |||||||||||||| Sbjct 206763 GGTAATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCT 206704 Query 242 TGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||||| ||||| ||||||||||||||| || ||||| |||||||||||||||| Sbjct 206703 TGGATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA- 206645 Query 302 TGAACGAAAGTTAGGGG 318 || ||||||| || || Sbjct 206644 AGATCGAAAGTCAGAGG 206628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914443513984