Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq51009 223 1e-55 seq76260 176 2e-41 seq1046 176 2e-41 seq58489 149 3e-33 seq49902 107 8e-21 >seq51009 Length=406 Score = 223 bits (246), Expect = 1e-55 Identities = 153/173 (88%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 ||||||||| |||| || ||| | || || ||| ||||| |||||| ||||||| Sbjct 205 TGCACCATCAACCGGTCAGGATTTTTTATGAGAGATCTGAGTCTAAGCATATTTGTTGGG 264 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 265 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGTCAGAGGAAACTCTGATGGAGG 324 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 325 CTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 377 >seq76260 Length=12653 Score = 176 bits (194), Expect = 2e-41 Identities = 120/135 (89%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1766 GAGCAAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAG 1707 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 1706 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACC 1647 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 1646 TGGGTATAGGGGCGA 1632 Score = 176 bits (194), Expect = 2e-41 Identities = 120/135 (89%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||| Sbjct 5362 GAGCAAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAG 5303 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 5302 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACC 5243 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 5242 TGGGTATAGGGGCGA 5228 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 12430 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 12371 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 12370 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 12311 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 12310 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 12266 >seq1046 Length=1918858 Score = 176 bits (194), Expect = 2e-41 Identities = 120/135 (89%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| |||||| || ||||||||||||||||||||||||||||||||| |||| |||| Sbjct 13620 GAGCAAGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAG 13679 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| Sbjct 13680 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACC 13739 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 13740 TGGGTATAGGGGCGA 13754 Score = 136 bits (150), Expect = 2e-29 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||| | | ||||| ||||||| Sbjct 12909 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGTTGGTGGTAAACTCCATCTAAGGCTAAAT 12968 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || | ||| ||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 12969 ACTGACACGAGTCCGATAGCGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 13028 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 13029 AGAGAGTTCAATAGTACGTGAAA 13051 >seq58489 Length=491 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 475 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 416 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 415 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 356 >seq49902 Length=393 Score = 107 bits (118), Expect = 8e-21 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 127 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 68 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 67 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 8 Query 160 AGAGAGT 166 ||||||| Sbjct 7 AGAGAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078226985900