Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq76260 82.4 1e-13 seq890 82.4 1e-13 seq4985 77.0 6e-12 >seq76260 Length=12653 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 3463 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAAGGTAACGCAGGTG 3404 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 3403 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 3349 >seq890 Length=1148126 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 881048 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAAGGTAACGCAGGTG 880989 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 880988 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 880934 >seq4985 Length=490927 Score = 77.0 bits (84), Expect = 6e-12 Identities = 86/114 (75%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 469069 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAAAGGTAACGCAGGTG 469128 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAA 225 || | | | |||||| ||| ||||||| ||| | ||| || ||||||| Sbjct 469129 TCCTATGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAA 469182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981587967808