Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4902 232 1e-58 seq2466 232 1e-58 seq1046 232 1e-58 seq890 232 1e-58 seq76060 131 3e-28 seq36771 127 4e-27 >seq4902 Length=494613 Score = 232 bits (256), Expect = 1e-58 Identities = 244/314 (78%), Gaps = 9/314 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCCGCTTTG-GCGGGTCGCCGGCTTC 75 || |||||| || |||||||||||| | | ||||| || | ||| | |||| Sbjct 479641 GAACGAGACTCTAGCCTGCTAAATAGTTCACCGATCCGCTCTGCGTCGGTG--CAACTTC 479584 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| | ||| | |||| || | ||||| |||||||||||||||||||| Sbjct 479583 TTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGATGC 479526 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||| ||||||||||||||||||||||| || ||||| | || | |||| Sbjct 479525 CCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTCTTATCCTT 479466 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | |||||||| ||||||| | | || ||| ||||||| ||||| | | ||| ||| Sbjct 479465 GCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGTAAT 479406 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||||||| Sbjct 479405 TCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGT 479346 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 479345 CCCTGCCCTTTGTA 479332 >seq2466 Length=405557 Score = 232 bits (256), Expect = 1e-58 Identities = 244/314 (78%), Gaps = 9/314 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCCGCTTTG-GCGGGTCGCCGGCTTC 75 || |||||| || |||||||||||| | | ||||| || | ||| | |||| Sbjct 206291 GAACGAGACTCTAGCCTGCTAAATAGTTCACCGATCCGCTCTGCGTCGGTG--CAACTTC 206234 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| | ||| | |||| || | ||||| |||||||||||||||||||| Sbjct 206233 TTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGATGC 206176 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||| ||||||||||||||||||||||| || ||||| | || | |||| Sbjct 206175 CCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTCTTATCCTT 206116 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | |||||||| ||||||| | | || ||| ||||||| ||||| | | ||| ||| Sbjct 206115 GCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGTAAT 206056 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||||||| Sbjct 206055 TCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGT 205996 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 205995 CCCTGCCCTTTGTA 205982 >seq1046 Length=1918858 Score = 232 bits (256), Expect = 1e-58 Identities = 244/314 (78%), Gaps = 9/314 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCCGCTTTG-GCGGGTCGCCGGCTTC 75 || |||||| || |||||||||||| | | ||||| || | ||| | |||| Sbjct 11510 GAACGAGACTCTAGCCTGCTAAATAGTTCACCGATCCGCTCTGCGTCGGTG--CAACTTC 11567 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| | ||| | |||| || | ||||| |||||||||||||||||||| Sbjct 11568 TTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGATGC 11625 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||| ||||||||||||||||||||||| || ||||| | || | |||| Sbjct 11626 CCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTCTTATCCTT 11685 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | |||||||| ||||||| | | || ||| ||||||| ||||| | | ||| ||| Sbjct 11686 GCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGTAAT 11745 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||||||| Sbjct 11746 TCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGT 11805 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 11806 CCCTGCCCTTTGTA 11819 >seq890 Length=1148126 Score = 232 bits (256), Expect = 1e-58 Identities = 244/314 (78%), Gaps = 9/314 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCCGCTTTG-GCGGGTCGCCGGCTTC 75 || |||||| || |||||||||||| | | ||||| || | ||| | |||| Sbjct 877306 GAACGAGACTCTAGCCTGCTAAATAGTTCACCGATCCGCTCTGCGTCGGTG--CAACTTC 877249 Query 76 TTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGC 134 |||||||||| | ||| | |||| || | ||||| |||||||||||||||||||| Sbjct 877248 TTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTGATGC 877191 Query 135 CCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTT 194 |||||||||||| ||||||||||||||||||||||| || ||||| | || | |||| Sbjct 877190 CCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACGTGCTCTTATCCTT 877131 Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 | |||||||| ||||||| | | || ||| ||||||| ||||| | | ||| ||| Sbjct 877130 GCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGCTTGTAAT 877071 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | || | | | |||||||||| || |||||||||| ||||| ||| |||||||||||||| Sbjct 877070 TCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATAAGCTCGCGTTGATTACGT 877011 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 877010 CCCTGCCCTTTGTA 876997 >seq76060 Length=5805 Score = 131 bits (144), Expect = 3e-28 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTG 236 ||||| | || | ||||| |||||||| ||||||| | | || ||| ||||||| Sbjct 7 CAACGTGCTCTTATCCTTGCCCGGAAGGGTTGGGTAACCCGTTGAACCTCCTTCGTGCTA 66 Query 237 GGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATC 296 ||||| | | ||| |||| || | | | |||||||||| || |||||||||| ||||| Sbjct 67 GGGATTGGGGCTTGTAATTCTTCCCCATGAACGAGGAATTCCCAGTAAGCGCGAGTCATA 126 Query 297 AGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||||||||||||||||||| Sbjct 127 AGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 158 >seq36771 Length=294 Score = 127 bits (140), Expect = 4e-27 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||||| ||||||||||||||| | |||||||| ||| ||| |||||||||| |||| Sbjct 174 AAACTTCATCGTGCTGGGGATAGTCCCTTGCAATTTTTGGACTTTAACGAGGAATTCCTA 233 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| | ||||||| | |||||||||||||||||||||||||||| Sbjct 234 GTAAGCGTGAGTCATCAACTCGCGTTGATTACGTCCCTGCCCTTTGTA 281 Score = 105 bits (116), Expect = 1e-20 Identities = 104/132 (79%), Gaps = 3/132 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGG--GTCGCCGGCTTCTT 77 || ||||||||||||||||||||||| | || ||| || || |||||| Sbjct 37 GAACGAGACCTTAACCTGCTAAATAGTTACGCGAATTTTCTAATTCGTGGCTAACTTCTT 96 Query 78 AGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||||| | | | | |||||||||||||||||||||||||||||||||||| Sbjct 97 AGAGGGACTATAGATTTTTAATCTATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 156 Query 137 TTAGATGTTCTG 148 |||||||||||| Sbjct 157 TTAGATGTTCTG 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946417063424