Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mizuhopecten_20yessoensis_20[genbank_20GCA_5F002113885.2_202017-06- 12] 82,658 sequences; 987,568,220 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3918 140 3e-28 seq3345 87.8 1e-12 >seq3918 Length=790838 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 || ||||| ||||| || || | || |||||| |||| | || |||||| |||||| Sbjct 707738 GACAATCCACGTCGCTTTGTTGTATTTCCCATCAAGTACCACGACATTTGGAAGATGTAC 707679 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAAT 61161 |||||||| ||||| ||||||||||| | ||||| || ||| |||||||||||||||| Sbjct 707678 AAAAAGGCAGAAGCCTCCTTCTGGACTGCTGAGGAAGTAGATCTGTCCAAAGACATGAAC 707619 Query 61162 GACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTT 61221 |||||||| | | || |||| |||||||||| ||||| | || |||||| Sbjct 707618 CACTGGGAGAACCTGAAGGACGATGAAAAACATTTCATCTCGCATGTACTTGCATTCTTT 707559 Query 61222 GCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253 || || || || || ||||||||||| || Sbjct 707558 GCTGCCAGTGATGGAATTGTCAATGAGAACTT 707527 >seq3345 Length=2905891 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 |||||| ||| | | ||||| || || || || || || || || || |||||||| Sbjct 2713002 CTCGTCGGGACTGCTGTACTCCACGATCTCCGTACAGAGGTTGCTACACTTGATGGTGCC 2713061 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 | ||||||||||| ||| | || || |||||||||| ||||||||| ||||| Sbjct 2713062 GAGGTTCTGTTGATTCGACTTCCTGTTACAACTGTCCTTGTACAACATGTACGGGGTGCC 2713121 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 || || || |||||||||||||||| ||| Sbjct 2713122 CGTTTCTGTCTGCGACTCAATGATGGCGTACCA 2713154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397167492233120