Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mnemiopsis_20leidyi_20[genbank_20GCA_5F000226015.1_202011-09-19] 5,100 sequences; 155,865,547 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1223 466 6e-129 seq345 134 5e-29 seq2213 105 2e-20 >seq1223 Length=156115 Score = 466 bits (516), Expect = 6e-129 Identities = 364/432 (84%), Gaps = 8/432 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| |||||||| |||||| |||| | |||||||||||||||||||| Sbjct 5792 CTTTTGTTCTACAAGAGATTTCCGTTCTCTTTGAGCTCACCTTAGGACACCTGCGTTATC 5851 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||||||||||||||||||||||||||||||| |||| | | |||||| Sbjct 5852 GTTTGACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTGTGTCTCCGGCTCGGATC 5911 Query 127 GGCCCGCG--AAGGACC---TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 | | | |||| | |||| | |||| || || | | ||||||||| Sbjct 5912 ACCGCTCCGAAAGGTGCGGCTTAAATCTAGAAGGTGAGGCTTGCACCTCGCTTCCGCTTC 5971 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 | || |||||||||||||||| | |||||||||||||| | ||| | |||||| Sbjct 5972 ACCGAATAAGTAAAAAAACGATGAAAGTAGTGGTATTTCAATGTCGCTTAC---GCTCCC 6028 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||| ||| ||| |||||||||||| ||||||||||||||||||||||| Sbjct 6029 ACTTATGCTACACCCTTCATGTCTTTTCACAAAGTCAGACTAGAGTCAAGCTCAACAGGG 6088 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 6089 TCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 6148 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6149 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 6208 Query 422 GCATTTGGCTAC 433 |||||||||||| Sbjct 6209 GCATTTGGCTAC 6220 Score = 178 bits (196), Expect = 4e-42 Identities = 100/101 (99%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10957 CCATAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 11016 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||| Sbjct 11017 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 11057 >seq345 Length=54079 Score = 134 bits (148), Expect = 5e-29 Identities = 74/74 (100%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 460 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8894 CGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATC 8835 Query 520 ACATTGCGTCAACA 533 |||||||||||||| Sbjct 8834 ACATTGCGTCAACA 8821 >seq2213 Length=269843 Score = 105 bits (116), Expect = 2e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 ||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||| Sbjct 67391 CGCGCTTGGTTGAATTTCTCCACTTCGACATACAGAGCACTGGGGAGAAATCACATTGCG 67450 Query 528 TCAACATC 535 |||||||| Sbjct 67451 TCAACATC 67458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635116604800