Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq20678 136 7e-30 seq10586 129 1e-27 >seq20678 Length=151248 Score = 136 bits (150), Expect = 7e-30 Identities = 144/185 (78%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 72847 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 72906 Query 100 AAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| | || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 72907 AAAGCAGGCAGGTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 72965 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||||| |||||| | ||| | | ||||||||| | ||||| | |||||| | || Sbjct 72966 ATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGATTGAGAGGGACTGACGGGGGCATTCGT 73024 Query 217 ATTCA 221 ||||| Sbjct 73025 ATTCA 73029 Score = 93.3 bits (102), Expect = 8e-17 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 61289 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 61348 Query 100 AAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGAC 148 ||||||||| | || ||||| ||||||||| || ||||||||| Sbjct 61349 AAAGCAGGCAGGTCGCCTGAATAATGGTGCATGGAATNATGGAATAGGAC 61398 >seq10586 Length=39578 Score = 129 bits (142), Expect = 1e-27 Identities = 134/171 (78%), Gaps = 5/171 (3%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||| |||| |||| |||| ||| | || |||||||||||||||||||||||||| Sbjct 14569 TGCTCTTGACTGAGTGTCTCGGGTGGCCGGAACGTTTACTTTGAAAAAATTAGAGTGTTC 14628 Query 100 AAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCT 158 ||||||||| | || ||||| |||||||||||| ||||||||| | ||||||| Sbjct 14629 AAAGCAGGCAGGTCGCCTGAATAATGGTGCATGGAATAATGGAATAGGACCT-CGGTTCT 14687 Query 159 ATTTTGTTGGTTTCTAGGACC--GCCGTAATGATTAATAGGGATAGTCGGG 207 |||||| |||||| | ||| | | ||||||||| | ||||| | |||| Sbjct 14688 ATTTTGCTGGTTT-TCGGAGCTTGAGGTAATGATTGAGAGGGACTGACGGG 14737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914517507904