Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq65844 179 2e-42 seq30253 178 5e-42 >seq65844 Length=40002 Score = 179 bits (198), Expect = 2e-42 Identities = 226/310 (73%), Gaps = 33/310 (11%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-- 462 || ||||||||| |||||||||||||||||||||||| | || ||| ||| | || Sbjct 39480 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCAAGTCATTGTGGTTCTC 39421 Query 463 ------AAACCCGTGCGCGTAATGAAAGTGAA----------CGG-------AGGTGGGA 499 ||||| ||| |||||||||||| ||| |||| ||| Sbjct 39420 ATAACGAAACCTAAAGGCGCAATGAAAGTGAAGGCCAGCCTCCGGCAGGCCTAGGTAGGA 39361 Query 500 ACCCGTGA--GGGTGCACCATCGACCGATCCTGATG----TCTTCGGATGGATTTGAGTA 553 ||| | ||| |||| | || || || | || || | ||| || ||| | Sbjct 39360 TCCCCGCAAGGGGCGCACTACCGGCCCGTC-TCATCCACATCGTTGGAGGGGCG-GAGCA 39303 Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 39302 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGCCAGA 39243 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || |||| ||||| |||||||||||||||||||| |||||| Sbjct 39242 GGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTGGGT 39183 Query 674 ATAGGGGCGA 683 ||||||| || Sbjct 39182 ATAGGGGNGA 39173 Score = 129 bits (142), Expect = 2e-27 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 590 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGT 649 |||||||| |||| |||||||||||||||||||||||||| || |||| ||||| ||| Sbjct 38560 ATGCCTGAGTAGGACGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGT 38501 Query 650 GCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||| |||||||||||||||| Sbjct 38500 GCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 38467 >seq30253 Length=52010 Score = 178 bits (196), Expect = 5e-42 Identities = 119/133 (89%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 550 AGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGC 609 || || ||| || |||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 39493 AGCAACAGCGTACATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGTAGGACGAAGC 39434 Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| || Sbjct 39433 CAGAGGAAACTCTGGTGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTT 39374 Query 670 GGGTATAGGGGCG 682 ||||||||||||| Sbjct 39373 GGGTATAGGGGCG 39361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078400409150