Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq56612 387 2e-105 seq53559 379 3e-103 seq2074 86.0 1e-14 >seq56612 Length=27498 Score = 387 bits (428), Expect = 2e-105 Identities = 263/294 (89%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 8640 TACTGAGCAGGATTACCATTGCAACGACATGTCATCAGTAGGGTAAAACTAACCTGTCTC 8581 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 8580 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 8521 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8520 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 8461 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 8460 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCT 8401 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 8400 TAAAACTCTTAAAATCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 8347 >seq53559 Length=231691 Score = 379 bits (420), Expect = 3e-103 Identities = 260/292 (89%), Gaps = 1/292 (0%) Strand=Plus/Plus Query 3 CTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTCAT 61 || ||| | || ||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 83814 CTGAGCAGGATAACCATTGCAACGACATGTCATCAGTAGGGTAAAACTAACCTGTCTCAC 83873 Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 83874 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAA 83933 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83934 TTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 83993 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | Sbjct 83994 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTTA 84053 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | | | |||||||||||||||||| |||||| ||| ||||||| Sbjct 84054 AAACTCTTAAAATCAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 84105 >seq2074 Length=108457 Score = 86.0 bits (94), Expect = 1e-14 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 199 AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA 258 ||||||||||||||||||||| ||||||| ||||||| || | ||| | | | || Sbjct 89577 AGCCAGTTATCCCTGTGGTAATTTTTCTGACACCTCTTGCTTAAAACTCTTAAAATCAAA 89518 Query 259 AGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| | ||||||| |||||| ||| ||||||| Sbjct 89517 AGGATCAAAAGGCCACGCTTTCACGGTCTGTATTC 89483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853762848288