Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq11254 159 3e-34 seq66969 93.3 3e-14 seq45074 87.8 1e-12 >seq11254 Length=169933 Score = 159 bits (176), Expect = 3e-34 Identities = 425/640 (66%), Gaps = 12/640 (2%) Strand=Plus/Plus Query 61299 TTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCAT 61358 ||| ||||| || |||||||||||||| || | ||||| || |||||||| | | || Sbjct 70320 TTTTTACGGATTTCAGATTGCCATGGAAAACATACACTCTGAAATGTACAGCTTGATGAT 70379 Query 61359 CGATACGTACATCAGGGAGCGGGCGGAACGT---GAACGATTGTTCAATGCCATCGAGAC 61415 ||||| | || | || | | | |||| || | ||| | || || || || || Sbjct 70380 AGATACTTTTATTAAAGATC---CTGTACGTAAAGACCAGTTGCTAAACGCAATAGAAAC 70436 Query 61416 GATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGAT-CACCAGTACAACGG 61474 ||||| || || ||| || | |||||| | |||||||| ||| | | | Sbjct 70437 CATACCTTGCGTTCAGAAGAAGGCCAAATGGGCCATAAATTGGATACACGA-TTCTGATT 70495 Query 61475 CTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGAT 61534 ||| |||| | ||| |||| |||||||| ||||| || || | || || ||| Sbjct 70496 CTAATTTTGCCGTGCGACTGCTAGCATTTGCCGTGGTAGAAGGCATCTTCTTTTCTGGTA 70555 Query 61535 CGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCA 61594 ||||| ||||| |||||||| |||||||| || || ||||| ||| | || ||||||| Sbjct 70556 GTTTTGCTGCAATTTTTTGGTTAAAGAAACGAGGTCTCATGCCGGGTTTAACGTTCAGCA 70615 Query 61595 ATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAAC 61654 | ||| | || | || || || | || | | | ||||| | || ||||| Sbjct 70616 ACGAGCTAATCAGTAGGGATGAAGGTTTACACTATCAATTTGCCTGCCTACTTTTCAACG 70675 Query 61655 GCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGT-TCGTGAGGCGGTA 61713 | | ||| | || || ||| || | | || ||||| || ||| || || || Sbjct 70676 ACCACCTGAAGCATAAACCCTCGCAGAATAGGGTACACGAGATCGTGTCG-GATGCCGTT 70734 Query 61714 ACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGT 61773 || ||||| || ||| |||| || || || |||||| ||| || || ||||| Sbjct 70735 TTGATAGAACAAGAGTTTTTGACGGAAGCGTTACCCGTCAAACTGATTGGAATGAACAAC 70794 Query 61774 GGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTG-GGTAT 61832 | |||| |||||| ||||||||||| |||||| | ||| || |||||| ||| Sbjct 70795 ACCATGATGTGGCAGTACATTGAATTTGTAGCCGACAGACTGCTGACAGATTTGAATTAT 70854 Query 61833 GAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGG 61892 ||| | || ||| || ||| || ||| |||||||||| | || || ||||| || Sbjct 70855 GAA-AAACTGTACAATTCGTCAAATCCGTTTAATTTCATGGAGAACATCTCCCTGGAAGG 70913 Query 61893 CAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAA 61932 ||| || || ||||| || || | || || | |||||| Sbjct 70914 CAAAACCAACTTTTTTGAAAAGAGGGTCGGTCAATATCAA 70953 >seq66969 Length=194959 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | |||||||||||||| | ||| || |||| ||||||||| |||||| Sbjct 45404 GGACATTCATGTGGACACATCAGAGTCCACTCTCCATTGCTTTCTACACGCTTCATAAAC 45463 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 | || || ||||| | ||| ||||| ||||| | |||| | ||| || | || ||| Sbjct 45464 AAGTCTGGAATCCACATGGCATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTG 45523 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 | || ||| || ||||| ||||| || || |||||||| || |||||||| || || Sbjct 45524 TTCTTCTTACAA-TCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGC 45582 Query 66466 GAA 66468 || Sbjct 45583 AAA 45585 >seq45074 Length=316632 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 61396 TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAAT 61455 |||||||||||||| || || || || || || |||||| |||||||| | || Sbjct 223202 TTGTTCAATGCCATTGAAACAATGCCATGTGTAAAAGAGAAAGCAGATTGGGCTCTGAAA 223143 Query 61456 TGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | | || || | | || || || | |||||||||| | || || Sbjct 223142 TGGATAAATGAAAAAAATGCAGCTTATGCAGAGAGAGTTGTGGCATTTGCAGCAGTTGAA 223083 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || |||||||| ||| ||||| || || |||||| | || || || ||| ||||| Sbjct 223082 GGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTTTGGCTCAAAAAGCGAGGAATTATG 223023 Query 61576 CCCGGTCTGACCTTCAGCAATGA 61598 || ||||| |||||||| ||||| Sbjct 223022 CCTGGTCTTACCTTCAGTAATGA 223000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397206666968720