Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17184 156 8e-36 seq725093 147 4e-33 seq34421 86.0 1e-14 >seq17184 Length=8893 Score = 156 bits (172), Expect = 8e-36 Identities = 154/194 (79%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC--GT 184 |||||||||||| ||||||||| | ||||||||||||| |||||| | ||| | | || Sbjct 7623 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGCTGGTTT-TCGGAGCTCGAGGT 7566 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||| ||||| | |||||| | ||||| ||| ||||||||||||||||| Sbjct 7565 AATGATTAAGAGGGACTGACGGGGGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGG 7506 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || ||||| ||||||||||||||| || ||||| |||||||||||| ||| || Sbjct 7505 ATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGCATGTTTTCATTAGTCA-AGA 7447 Query 305 ACGAAAGTTAGGGG 318 |||||||| || || Sbjct 7446 ACGAAAGTCAGAGG 7433 Score = 127 bits (140), Expect = 4e-27 Identities = 184/251 (73%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTA-GCAT 130 |||||||||| ||||||||||| | ||||||||| | ||| ||||| | |||| Sbjct 8009 TTACTTTGAACAAATTAGAGTGCTTAAAGCAGGCTTCAAATGCCTGAATATTCTGTGCAT 7950 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTG-TTGGTTTCTAGGACC-GCCGTAATG 188 || ||||| |||| ||| | | ||||| ||| ||||||| || | | |||||| Sbjct 7949 GGGATAATGAAATAAGACCT-CTGTTCTGCTTTCATTGGTTTTCAGATCAAGAGGTAATG 7891 Query 189 ATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATT 247 |||||||| ||| ||||| | |||||| | |||||||||||||||||| Sbjct 7890 ATTAATAGAAGCAGTTTGGGGGCATTAGTATTACGACGCGAGAGGTGAAATTCTTGGACC 7831 Query 248 TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACG 307 |||||||||| |||||||| || |||| ||||||||||||||||| ||||| Sbjct 7830 GTCGTAAGACTAACTTAAGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AGAACG 7772 Query 308 AAAGTTAGGGG 318 |||||||| || Sbjct 7771 AAAGTTAGAGG 7761 >seq725093 Length=441 Score = 147 bits (162), Expect = 4e-33 Identities = 184/245 (75%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 79 TTTGAAA-AAATTAGAGTGTTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAAT 135 |||| || |||||| |||||| ||||||||| | | | ||||| ||||||||| Sbjct 342 TTTGTAACAAATTAAAGTGTTTAAAGCAGGCAATATCGCCTGAATAATGGTGCATGGAAT 283 Query 136 AATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC--GTAATGATTAA 193 ||| ||||||||| | |||||||||||| |||||| | ||| | | ||||||||||| Sbjct 282 AATGGAATAGGACCTA-GGTTCTATTTTGATGGTTT-TCGGAGCTCGAGGTAATGATTAA 225 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| | |||| | | ||||| ||| ||||||||||||||||||| | Sbjct 224 GAGGGACTGACGGGAGCATTCGTATTACGGTGTTAGAGGTGAAATTCTTGGATCGGAGTA 165 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| |||| |||||||| | || ||||| || ||||||||| ||| |||||||||| Sbjct 164 AGACGAACTTCTGCGAAATCATTTGCCAAGCATATTTTCATTAGTCA-AGAACGAAAGTC 106 Query 314 AGGGG 318 || || Sbjct 105 AGAGG 101 >seq34421 Length=6472 Score = 86.0 bits (94), Expect = 1e-14 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 230 AGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTT 289 ||||||||||||||||| ||||| ||||||||||||||| || ||||| ||||| Sbjct 1232 AGGTGAAATTCTTGGATCGCCGTAAGACGAACTACTGCGAAAGCATTTGCCAAGCATGTT 1173 Query 290 TTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| ||| |||||||||| || || Sbjct 1172 TTCATTAGTCA-AGAACGAAAGTCAGAGG 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 906026639232