Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1567 176 6e-42 seq5389 75.2 2e-11 >seq1567 Length=1296 Score = 176 bits (194), Expect = 6e-42 Identities = 192/252 (76%), Gaps = 6/252 (2%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| |||||||| || ||||| | || |||| Sbjct 616 TTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCATCTTACGATTTT-GCACA 674 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || || || | |||||||| || |||||| | Sbjct 675 GTGCTGTGTTTTTAATAAACAGTTGCAGCCACCTGGTATCTGCGACTCTCATCAGCTCCA 734 Query 122 --CACGTCG---TTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 | || | |||||| || || ||||||||||||||||||| ||||||||| Sbjct 735 TCCGCGAGGGACTTCACCGTCAAGAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 794 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 795 CTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCGACCACCTGTGT 854 Query 237 CGGTTTACGGTA 248 |||||| |||| Sbjct 855 CGGTTTGGGGTA 866 >seq5389 Length=6785 Score = 75.2 bits (82), Expect = 2e-11 Identities = 76/99 (77%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 144 ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA 203 || ||||||||||||||||| | | ||||||||||| |||||| | || ||| || Sbjct 197 ACTCCTTCTCCCGAAGTTACAGAGTCATTTTGCCGAGTTCCTTCAACAGTATTCTCCTAT 256 Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | ||||||||| |||||| | ||||||||| |||| Sbjct 257 TCACCTTAGTATACTCTACTAATCTACCTGTGTCAGTTT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694327321492