Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq5389 93.3 1e-16 >seq5389 Length=6785 Score = 93.3 bits (102), Expect = 1e-16 Identities = 190/274 (69%), Gaps = 9/274 (3%) Strand=Plus/Minus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGG-CAG 279 |||||| || | ||||||| || ||||||| |||| || | | | || ||| ||| Sbjct 5346 TGAGAGATTGTACAGCCACATAGGGACTGAGAAACGGCCCTACC-CTTATTTAAGGTCAG 5288 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| ||| ||||| ||||| || ||| ||| || | || || || || Sbjct 5287 CAGTGGGGAATTTTGGGCAATGAGCAAACGCTTGACCCAGTAATGTTGCATGGATGAAGA 5228 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA- 398 || | | ||||||| || | | | ||| ||||||| | || || | Sbjct 5227 AGATGATTG--TCGTAAATTCCTATTTTTATTGAACATAATGATCTAATTTAAGAACTTC 5170 Query 399 AGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 ||| |||||||| ||| |||||||| |||||||||||||| || || || |||| | Sbjct 5169 AGCACCGGCTAA-TACTCGTGCCAGCCGCCGCGGTAATACGAGAGGTGCAAGTGTTACTC 5111 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||| ||||||||||||| |||| |||| Sbjct 5110 TTCATGACT-GGGCGTAAAGGGTATGTAGATGGT 5078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497438199296