Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq771 122 2e-25 >seq771 Length=42375 Score = 122 bits (134), Expect = 2e-25 Identities = 219/312 (70%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||| | || | |||||||| || |||||| | | Sbjct 23135 AGGGGAGTGAAATAGAACCTGCAACCCTGTGCCTACAATGTGTGGGAGCCC---GCAAGG 23191 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC-GAGGTTAAG 129 ||||| || |||||||||||||||||| || ||||||| | ||| | || | || || Sbjct 23192 GTGACCGCCTGCCTTTTGCATAATGAGTCTGCGAGTTATT-GTCGGCGGCTGCCGT--AG 23248 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGT-GGC 188 | ||||| || | ||| | | ||||||||| || || ||||| || | | ||| Sbjct 23249 CCCCTCAGGGGCGGTGGCCCA-GCGAAAGCGAGTGCGAATAGCGCGACTAGGTCGCCGGC 23307 Query 189 GCTAGACGCGAAACCTTG-TGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 ||||| |||| | | |||||||| || | |||||||||| | |||||| | Sbjct 23308 AATAGACCCGAAGCGGAGGTGATCTACTCATGGTCAGGTTGAAGCTGGGGTAACACCCAG 23367 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 ||||||||||||| || | |||||||| | | ||||| | | ||||| | |||| Sbjct 23368 TGGAGGACCGAACTCGTGGATGTTGAAAAATCCTGAGATGAACTGTGAGTAGGAGCGAAA 23427 Query 308 GGCCAATCAAAC 319 | | |||||||| Sbjct 23428 GACTAATCAAAC 23439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972787742720