Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq952 192 9e-47 seq861 192 9e-47 >seq952 Length=22710 Score = 192 bits (212), Expect = 9e-47 Identities = 183/228 (80%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| ||||||||| |||||| | Sbjct 2589 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 2532 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| ||||||| ||| ||||||| | ||||| ||||| | ||| Sbjct 2531 CTCGTTCAAGGGAAACAATTACAAGTCCCTATCCCTAGCACGAGTCGGGTTCAACGGATT 2472 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 ||| ||||| |||||| || ||| || | ||||| ||| ||||||||||||| Sbjct 2471 ACCTCGACCTTTCGGCCTTGGAAATATACGCACGTTGATCGACTCATTGTAGCGCGCGTG 2412 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 2411 CGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2365 >seq861 Length=29000 Score = 192 bits (212), Expect = 9e-47 Identities = 183/228 (80%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| ||||||||| |||||| | Sbjct 19872 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTGGGAATT-C 19929 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| ||||||| ||| ||||||| | ||||| ||||| | ||| Sbjct 19930 CTCGTTCAAGGGAAACAATTACAAGTCCCTATCCCTAGCACGAGTCGGGTTCAACGGATT 19989 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTC--GTTGAATACATCAGTGTAGCGCGCGTG 177 ||| ||||| |||||| || ||| || | ||||| ||| ||||||||||||| Sbjct 19990 ACCTCGACCTTTCGGCCTTGGAAATATACGCACGTTGATCGACTCATTGTAGCGCGCGTG 20049 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 20050 CGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 20096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990820900