Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq952 73.4 2e-11 seq109 73.4 2e-11 >seq952 Length=22710 Score = 73.4 bits (80), Expect = 2e-11 Identities = 87/117 (74%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || || |||| | |||| | || ||| | | Sbjct 2054 GAACCCAAACGCTTTGGTTTCCCGGAAACTGCCAGACAAGTCGTA--GAGAACTCTGTCT 1997 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||| |||||||||||| || | |||| |||||||||||||||||||||| Sbjct 1996 GATCGTTAGCTGGCATAGTTTACAGTCGAAACTAGGACGGTATCTGATCGTCTTCGA 1940 >seq109 Length=5859 Score = 73.4 bits (80), Expect = 2e-11 Identities = 87/117 (74%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||| |||| || || |||| | |||| | || ||| | | Sbjct 2612 GAACCCAAACGCTTTGGTTTCCCGGAAACTGCCAGACAAGTCGTA--GAGAACTCTGTCT 2669 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||| |||||||||||| || | |||| |||||||||||||||||||||| Sbjct 2670 GATCGTTAGCTGGCATAGTTTACAGTCGAAACTAGGACGGTATCTGATCGTCTTCGA 2726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278396711400