Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq952 163 5e-38 seq109 140 6e-31 >seq952 Length=22710 Score = 163 bits (180), Expect = 5e-38 Identities = 189/247 (77%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGC-TC-GAATACATTA 126 || ||||| ||||||||||||||||||||||||||| ||| ||| || ||||| Sbjct 1688 ACGTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGACCTGTTTGAGTCTGAATATTCGT 1747 Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTA 185 |||||||||||| |||| || | |||||||||||||||||||| | || || || Sbjct 1748 GCATGGAATAATGAAATATGAATT-CGGTTCTATTTTGTTGGTTTTCGGAACTCGAGTTA 1806 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||| || ||||| || |||||| | ||| || || |||||||||||||||||| Sbjct 1807 ATGATCAAGAGGGACAGACGGGGGCATTCGTACTCTGCCGTTAGAGGTGAAATTCTTGGA 1866 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | |||||| | ||||||||||| || ||||| |||||||| ||||||| ||| Sbjct 1867 TCGGCGGAAGACGCGCAACTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCA-AGAA 1925 Query 306 CGAAAGT 312 ||| ||| Sbjct 1926 CGATAGT 1932 >seq109 Length=5859 Score = 140 bits (154), Expect = 6e-31 Identities = 173/229 (76%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 89 TTAGAGTGTTCAAAGCAGGCCT--TTGC-TC-GAATACATTAGCATGGAATAATAGAATA 144 |||||||||||||||||| ||| ||| || ||||| |||||||||||| |||| Sbjct 2960 TTAGAGTGTTCAAAGCAGACCTGTTTGAGTCTGAATATTCGTGCATGGAATAATGAAATA 2901 Query 145 GGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGT 203 || | |||||||||||||||||||| | || || ||||||| || ||||| || Sbjct 2900 TGAATT-CGGTTCTATTTTGTTGGTTTTCGGAACTCGAGTTAATGATCAAGAGGGACAGA 2842 Query 204 CGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTA 263 |||||| | ||| || || ||||||||||||||||||| |||||| | | Sbjct 2841 CGGGGGCATTCGTACTCTGCCGTTAGAGGTGAAATTCTTGGATCGGCGGAAGACGCGCAA 2782 Query 264 CTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||||| || ||||| |||||||| ||||||| |||||| ||| Sbjct 2781 CTGCGAAAGCATTTGCCAAGAATGTTTTCTTTAATCA-AGAACGATAGT 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915188468480