Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq861 165 3e-38 seq332 165 3e-38 seq952 145 3e-32 >seq861 Length=29000 Score = 165 bits (182), Expect = 3e-38 Identities = 217/294 (74%), Gaps = 19/294 (6%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC--AAA 465 ||||||||| ||||||||||||||||||||||| |||||| |||||| | ||| Sbjct 18284 CCCGTCTTGAAACACGGACCAAGGAGTCTAACACTCGCGCGAGTCATTGGGTTTACGAAA 18225 Query 466 CCC-GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCAC------- 515 || | || | |||| ||||| | |||| || | ||| | || |||| Sbjct 18224 CCTAGAAGGCAGAGTGAAGGTGAATGTAGGTTAGATCA-GTGTGTGTTCGCACGCGCTGC 18166 Query 516 -CAT---CGACCGATCCT-GATGTCTTCGGATGGATTT-GAGTAAGAGCATAGCTGTTGG 569 ||| || ||||| | || | || | | | | | | |||||| | |||||| Sbjct 18165 GCATAACCGCCCGATGCGAGAGCTTTTAAGTTCTGTGTCGCGGAAGAGCGTGCGTGTTGG 18106 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||| |||||| | |||||| || |||||| ||||||||| Sbjct 18105 GACCCGAAAGATGGTGAACTATGCTTGAATAAGTTGAAGCTAGGGGAAACCCTGGTGGAG 18046 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||| ||||| |||||||||||||||||||||||| |||||||||||| Sbjct 18045 GGCTGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGAGTATAGGGGCGA 17992 Score = 158 bits (174), Expect = 5e-36 Identities = 216/292 (74%), Gaps = 21/292 (7%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC--AAA 465 ||||||||| ||||||||||||||||||||||| |||||| |||||| | ||| Sbjct 24829 CCCGTCTTGAAACACGGACCAAGGAGTCTAACACTCGCGCGAGTCATTGGGTTTACGAAA 24770 Query 466 CCC-GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCAC------- 515 || | || | |||| ||||| | |||| || | ||| | || |||| Sbjct 24769 CCTAGAAGGCAGAGTGAAGGTGAATGTAGGTTAGATCA-GTGTGTGTTCGCACGCGCTGC 24711 Query 516 -CAT---CGACCGATCCT-GATGTCTTCGGATGGATTT-GAGTAAGAGCATAGCTGTTGG 569 ||| || |||| | || | || | | | | | | | |||||| | |||||| Sbjct 24710 GCATAACCGCCCGAAGCGAGAGCTTTTAAGTTCGGTGTCGCGGAAGAGCGTGCGTGTTGG 24651 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||| |||||| | |||||| || |||||| ||||||||| Sbjct 24650 GACCCGAAAGATGGTGAACTATGCTTGAATAAGTTGAAGCTAGGGGAAACCCTGGTGGAG 24591 Query 630 -GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 ||| | |||| ||||| |||||||||||||||||||||||| ||||||||| Sbjct 24590 AGCT-GTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGAGTATAGGGG 24540 Score = 140 bits (154), Expect = 1e-30 Identities = 121/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||| ||||||||||||| ||| |||||| | ||||||||||||| Sbjct 18771 GAGTCGAGTTGTTTGTTAATGCAGCTCTAAGCGGGTGGTAAACCCCATCTAAAGCTAAAT 18712 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 18711 ACTGATATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 18652 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 ||||||| || ||| |||||||| ||||| Sbjct 18651 AGAGAGTGAATAAGTACGTGAAACCGTTGA 18622 >seq332 Length=2908 Score = 165 bits (182), Expect = 3e-38 Identities = 217/294 (74%), Gaps = 19/294 (6%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC--AAA 465 ||||||||| ||||||||||||||||||||||| |||||| |||||| | ||| Sbjct 2846 CCCGTCTTGAAACACGGACCAAGGAGTCTAACACTCGCGCGAGTCATTGGGTTTACGAAA 2787 Query 466 CCC-GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCAC------- 515 || | || | |||| ||||| | |||| || | ||| | || |||| Sbjct 2786 CCTAGAAGGCAGAGTGAAGGTGAATGTAGGTTAGATCA-GTGTGTGTTCGCACGCGCTGC 2728 Query 516 -CAT---CGACCGATCCT-GATGTCTTCGGATGGATTT-GAGTAAGAGCATAGCTGTTGG 569 ||| || ||||| | || | || | | | | | | |||||| | |||||| Sbjct 2727 GCATAACCGCCCGATGCGAGAGCTTTTAAGTTCTGTGTCGCGGAAGAGCGTGCGTGTTGG 2668 Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||| |||||| | |||||| || |||||| ||||||||| Sbjct 2667 GACCCGAAAGATGGTGAACTATGCTTGAATAAGTTGAAGCTAGGGGAAACCCTGGTGGAG 2608 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||| ||||| |||||||||||||||||||||||| |||||||||||| Sbjct 2607 GGCTGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGAGTATAGGGGCGA 2554 >seq952 Length=22710 Score = 145 bits (160), Expect = 3e-32 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||||||||||||| ||| | |||| | ||||||||||||| Sbjct 3691 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAGCGGGTGTTAAACCCCATCTAAAGCTAAAT 3750 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || |||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 3751 ACTGATATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 3810 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 ||||||| || ||| |||||||| ||||| Sbjct 3811 AGAGAGTGAATAAGTACGTGAAACCGTTGA 3840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079972973000