Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq771 86.0 9e-15 >seq771 Length=42375 Score = 86.0 bits (94), Expect = 9e-15 Identities = 85/109 (78%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| | | |||||| ||||||| | ||| | Sbjct 24296 GGCACCCCTTCTCCCGAAGTTACGGGGCTAATGTGCCGAGTTCCTTAGAGAGGTTTCTCT 24237 Query 201 CGAACGCCTTAGTATTC-TCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || |||||| || | | ||| |||||||||||||||||||||| Sbjct 24236 CGCGCGCCTTGGTGCACTTACACCCACCCACCTGTGTCGGTTTACGGTA 24188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694391523980