Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq771 188 2e-45 >seq771 Length=42375 Score = 188 bits (208), Expect = 2e-45 Identities = 210/275 (76%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAG----TCTCGGGTGGAGACAGCGCCGCCAT 68 |||||||||| || ||| || |||| | ||| |||| | |||||| | | Sbjct 24597 GCATCTTCACCGCAATTACAGTTTCGCCGAGATCCTCTCCG----AGACAGTCGTTCAGT 24542 Query 69 CGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 128 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24541 CGTTACACGATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 24482 Query 129 GTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAAC 186 ||||| |||||||||| | || || ||| ||| | | ||||||| || ||| || Sbjct 24481 GTTATAGTTACGGCCGACATTCACGGGGACTTGGGTTCGCCGCTTCGCCTTGCGGCTGAC 24422 Query 187 CCCATCA-ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGT 244 | ||| || | ||| | ||| || || | ||||||||||||||||| ||| || Sbjct 24421 AGC-TCACCTTGATCTTTCCGCATTGGTCACGTGTCACACCCTATACGTCGTCTTGACGA 24363 Query 245 GTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || |||||||||||||||||| ||||||||||| Sbjct 24362 CTTGGCAGAGTGCTGTGTTTTTGTTAAACAGTCGC 24328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260784113920