Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oikopleura_20dioica_20[genbank_20GCA_5F000209535.1_202010-12-02] 1,260 sequences; 70,471,451 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq771 259 1e-66 >seq771 Length=42375 Score = 259 bits (286), Expect = 1e-66 Identities = 271/351 (77%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| |||||| |||| ||||| | |||||||| | ||| Sbjct 24599 CGGCATCTTCACCGCAATTACAGTTTCGCCGAGATCCTCTCCGAGACAGTCGTTCAGTCG 24540 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 24539 TTACACGATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 24480 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAG 182 |||||||||||||| | || || ||| ||| |||| | |||||| |||| || |||| Sbjct 24479 TATAGTTACGGCCGACATTCACGGGGACTTGGGTTCGCCGCTTCGCCTTGCGGCTGACAG 24420 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTG-CGACTT 241 || |||| | ||| | ||| || || | |||| ||||||| |||||||| |||||| Sbjct 24419 CTCACCTTGATCTTTCCGCATTGGTCACGTGTCACACCCTATACGTCGTCTTGACGACTT 24360 Query 242 AGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATA 301 ||||| ||||||||||| |||||||||||| | ||| ||| | || | | Sbjct 24359 GGCAGAGTGCTGTGTTTTTGTTAAACAGTCGCTAAACGCAATTTACTGAGACC-CCCCGA 24301 Query 302 GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| | | |||||||||||||| Sbjct 24300 GGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTAATGTGCCGAGTTCCTTA 24250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062386613760